Literature DB >> 12519974

The FlyBase database of the Drosophila genome projects and community literature.

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Abstract

FlyBase (http://flybase.bio.indiana.edu/) provides an integrated view of the fundamental genomic and genetic data on the major genetic model Drosophila melanogaster and related species. FlyBase has primary responsibility for the continual reannotation of the D. melanogaster genome. The ultimate goal of the reannotation effort is to decorate the euchromatic sequence of the genome with as much biological information as is available from the community and from the major genome project centers. A complete revision of the annotations of the now-finished euchromatic genomic sequence has been completed. There are many points of entry to the genome within FlyBase, most notably through maps, gene products and ontologies, structured phenotypic and gene expression data, and anatomy.

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Mesh:

Year:  2003        PMID: 12519974      PMCID: PMC165541          DOI: 10.1093/nar/gkg094

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  5 in total

1.  Phenotypic data in FlyBase.

Authors:  R Drysdale
Journal:  Brief Bioinform       Date:  2001-03       Impact factor: 11.622

2.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

3.  Genie--gene finding in Drosophila melanogaster.

Authors:  M G Reese; D Kulp; H Tammana; D Haussler
Journal:  Genome Res       Date:  2000-04       Impact factor: 9.043

4.  Prediction of complete gene structures in human genomic DNA.

Authors:  C Burge; S Karlin
Journal:  J Mol Biol       Date:  1997-04-25       Impact factor: 5.469

5.  The Drosophila gene collection: identification of putative full-length cDNAs for 70% of D. melanogaster genes.

Authors:  Mark Stapleton; Guochun Liao; Peter Brokstein; Ling Hong; Piero Carninci; Toshiyuki Shiraki; Yoshihide Hayashizaki; Mark Champe; Joanne Pacleb; Ken Wan; Charles Yu; Joe Carlson; Reed George; Susan Celniker; Gerald M Rubin
Journal:  Genome Res       Date:  2002-08       Impact factor: 9.043

  5 in total
  183 in total

1.  RPG: the Ribosomal Protein Gene database.

Authors:  Akihiro Nakao; Maki Yoshihama; Naoya Kenmochi
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

2.  A genetic screen in Drosophila for identifying novel components of the hedgehog signaling pathway.

Authors:  Russell T Collins; Stephen M Cohen
Journal:  Genetics       Date:  2005-03-02       Impact factor: 4.562

3.  Pathbase: a database of mutant mouse pathology.

Authors:  Paul N Schofield; Jonathan B L Bard; Catherine Booth; Jacques Boniver; Vincenzo Covelli; Philippe Delvenne; Michele Ellender; Wilhelm Engstrom; Wolfgang Goessner; Michael Gruenberger; Heinz Hoefler; John Hopewell; Mariatheresa Mancuso; Carmel Mothersill; Christopher S Potten; Leticia Quintanilla-Fend; Bjorn Rozell; Hannu Sariola; John P Sundberg; Andrew Ward
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

4.  Flytrap, a database documenting a GFP protein-trap insertion screen in Drosophila melanogaster.

Authors:  Reed J Kelso; Michael Buszczak; Ana T Quiñones; Claudia Castiblanco; Stacy Mazzalupo; Lynn Cooley
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

5.  Systematic gene targeting on the X chromosome of Drosophila melanogaster.

Authors:  Nicole Beinert; Meike Werner; Gordon Dowe; Ho-Ryun Chung; Herbert Jäckle; Ulrich Schäfer
Journal:  Chromosoma       Date:  2004-10-12       Impact factor: 4.316

6.  Two interdependent TRPV channel subunits, inactive and Nanchung, mediate hearing in Drosophila.

Authors:  Zhefeng Gong; Wonseok Son; Yun Doo Chung; Janghwan Kim; Dong Wook Shin; Colleen A McClung; Yong Lee; Hye Won Lee; Deok-Jin Chang; Bong-Kiun Kaang; Hawon Cho; Uhtaek Oh; Jay Hirsh; Maurice J Kernan; Changsoo Kim
Journal:  J Neurosci       Date:  2004-10-13       Impact factor: 6.167

7.  Cell cycle-dependent and cell cycle-independent control of transcription by the Drosophila E2F/RB pathway.

Authors:  Dessislava K Dimova; Olivier Stevaux; Maxim V Frolov; Nicholas J Dyson
Journal:  Genes Dev       Date:  2003-09-15       Impact factor: 11.361

8.  Identifying biological themes within lists of genes with EASE.

Authors:  Douglas A Hosack; Glynn Dennis; Brad T Sherman; H Clifford Lane; Richard A Lempicki
Journal:  Genome Biol       Date:  2003-09-11       Impact factor: 13.583

9.  A deficiency screen for dominant suppressors of telomeric silencing in Drosophila.

Authors:  James M Mason; Joshua Ransom; Alexander Y Konev
Journal:  Genetics       Date:  2004-11       Impact factor: 4.562

10.  Drosophila crinkled, mutations of which disrupt morphogenesis and cause lethality, encodes fly myosin VIIA.

Authors:  Daniel P Kiehart; Josef D Franke; Mark K Chee; R A Montague; Tung-Ling Chen; John Roote; Michael Ashburner
Journal:  Genetics       Date:  2004-11       Impact factor: 4.562

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