Literature DB >> 14681443

CADRE: the Central Aspergillus Data REpository.

J E Mabey1, M J Anderson, P F Giles, C J Miller, T K Attwood, N W Paton, E Bornberg-Bauer, G D Robson, S G Oliver, D W Denning.   

Abstract

CADRE is a public resource for housing and analysing genomic data extracted from species of Aspergillus. It arose to enable maintenance of the complete annotated genomic sequence of Aspergillus fumigatus and to provide tools for searching, analysing and visualizing features of fungal genomes. By implementing CADRE using Ensembl, a framework is in place for storing and comparing several genomes: the resource will thus expand by including other Aspergillus genomes (such as Aspergillus nidulans) as they become available. CADRE is accessible at http://www.cadre. man.ac.uk.

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Year:  2004        PMID： 14681443      PMCID： PMC308744          DOI： 10.1093/nar/gkh009

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  13 in total

1.  PRINTS and its automatic supplement, prePRINTS.

Authors:  T K Attwood; P Bradley; D R Flower; A Gaulton; N Maudling; A L Mitchell; G Moulton; A Nordle; K Paine; P Taylor; A Uddin; C Zygouri
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

Review 2.  Aspergillosis. Pathogenesis, clinical manifestations, and therapy.

Authors:  Kieren A Marr; Thomas Patterson; David Denning
Journal:  Infect Dis Clin North Am       Date:  2002-12       Impact factor: 5.982

3.  The genetics of Aspergillus nidulans.

Authors:  G PONTECORVO; J A ROPER; L M HEMMONS; K D MACDONALD; A W J BUFTON
Journal:  Adv Genet       Date:  1953       Impact factor: 1.944

4.  TNP-470 is an effective antimicrosporidial agent.

Authors:  C Coyle; M Kent; H B Tanowitz; M Wittner; L M Weiss
Journal:  J Infect Dis       Date:  1998-02       Impact factor: 5.226

Review 5.  Toxigenic fungi: which are important?

Authors:  J I Pitt
Journal:  Med Mycol       Date:  2000       Impact factor: 4.076

Review 6.  Sequencing the Aspergillus fumigatus genome.

Authors:  David W Denning; Michael J Anderson; Geoffrey Turner; Jean Paul Latgé; Joan W Bennett
Journal:  Lancet Infect Dis       Date:  2002-04       Impact factor: 25.071

7.  Trends in the postmortem epidemiology of invasive fungal infections at a university hospital.

Authors:  A H Groll; P M Shah; C Mentzel; M Schneider; G Just-Nuebling; K Huebner
Journal:  J Infect       Date:  1996-07       Impact factor: 6.072

8.  Fungal antigens as a source of sensitization and respiratory disease in Scottish maltworkers.

Authors:  W Blyth; I W Grant; E S Blackadder; M Greenberg
Journal:  Clin Allergy       Date:  1977-11

9.  The Pfam protein families database.

Authors:  Alex Bateman; Ewan Birney; Lorenzo Cerruti; Richard Durbin; Laurence Etwiller; Sean R Eddy; Sam Griffiths-Jones; Kevin L Howe; Mhairi Marshall; Erik L L Sonnhammer
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

10.  The distributed annotation system.

Authors:  R D Dowell; R M Jokerst; A Day; S R Eddy; L Stein
Journal:  BMC Bioinformatics       Date:  2001-10-10       Impact factor: 3.169
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  33 in total

1.  Extensive proteomic remodeling is induced by eukaryotic translation elongation factor 1Bγ deletion in Aspergillus fumigatus.

Authors:  Grainne O'Keeffe; Christoph Jöchl; Kevin Kavanagh; Sean Doyle
Journal:  Protein Sci       Date:  2013-09-30       Impact factor: 6.725

2.  The small GTPase RacA mediates intracellular reactive oxygen species production, polarized growth, and virulence in the human fungal pathogen Aspergillus fumigatus.

Authors:  Haiyan Li; Bridget M Barker; Nora Grahl; Srisombat Puttikamonkul; Jeremey D Bell; Kelly D Craven; Robert A Cramer
Journal:  Eukaryot Cell       Date:  2010-12-23

3.  Proteomic studies in biomedically and industrially relevant fungi.

Authors:  Stephen Carberry; Sean Doyle
Journal:  Cytotechnology       Date:  2007-02-17       Impact factor: 2.058

4.  A regulator of Aspergillus fumigatus extracellular proteolytic activity is dispensable for virulence.

Authors:  Anna Bergmann; Thomas Hartmann; Timothy Cairns; Elaine M Bignell; Sven Krappmann
Journal:  Infect Immun       Date:  2009-06-29       Impact factor: 3.441

5.  Transcriptome analysis of cyclic AMP-dependent protein kinase A-regulated genes reveals the production of the novel natural compound fumipyrrole by Aspergillus fumigatus.

Authors:  Juliane Macheleidt; Kirstin Scherlach; Toni Neuwirth; Wolfgang Schmidt-Heck; Maria Straßburger; Joseph Spraker; Joshua A Baccile; Frank C Schroeder; Nancy P Keller; Christian Hertweck; Thorsten Heinekamp; Axel A Brakhage
Journal:  Mol Microbiol       Date:  2015-03-11       Impact factor: 3.501

6.  The 2008 update of the Aspergillus nidulans genome annotation: a community effort.

Authors:  Jennifer Russo Wortman; Jane Mabey Gilsenan; Vinita Joardar; Jennifer Deegan; John Clutterbuck; Mikael R Andersen; David Archer; Mojca Bencina; Gerhard Braus; Pedro Coutinho; Hans von Döhren; John Doonan; Arnold J M Driessen; Pawel Durek; Eduardo Espeso; Erzsébet Fekete; Michel Flipphi; Carlos Garcia Estrada; Steven Geysens; Gustavo Goldman; Piet W J de Groot; Kim Hansen; Steven D Harris; Thorsten Heinekamp; Kerstin Helmstaedt; Bernard Henrissat; Gerald Hofmann; Tim Homan; Tetsuya Horio; Hiroyuki Horiuchi; Steve James; Meriel Jones; Levente Karaffa; Zsolt Karányi; Masashi Kato; Nancy Keller; Diane E Kelly; Jan A K W Kiel; Jung-Mi Kim; Ida J van der Klei; Frans M Klis; Andriy Kovalchuk; Nada Krasevec; Christian P Kubicek; Bo Liu; Andrew Maccabe; Vera Meyer; Pete Mirabito; Márton Miskei; Magdalena Mos; Jonathan Mullins; David R Nelson; Jens Nielsen; Berl R Oakley; Stephen A Osmani; Tiina Pakula; Andrzej Paszewski; Ian Paulsen; Sebastian Pilsyk; István Pócsi; Peter J Punt; Arthur F J Ram; Qinghu Ren; Xavier Robellet; Geoff Robson; Bernhard Seiboth; Piet van Solingen; Thomas Specht; Jibin Sun; Naimeh Taheri-Talesh; Norio Takeshita; Dave Ussery; Patricia A vanKuyk; Hans Visser; Peter J I van de Vondervoort; Ronald P de Vries; Jonathan Walton; Xin Xiang; Yi Xiong; An Ping Zeng; Bernd W Brandt; Michael J Cornell; Cees A M J J van den Hondel; Jacob Visser; Stephen G Oliver; Geoffrey Turner
Journal:  Fungal Genet Biol       Date:  2008-12-25       Impact factor: 3.495

7.  The Aspergillus fumigatus protein GliK protects against oxidative stress and is essential for gliotoxin biosynthesis.

Authors:  Lorna Gallagher; Rebecca A Owens; Stephen K Dolan; Grainne O'Keeffe; Markus Schrettl; Kevin Kavanagh; Gary W Jones; Sean Doyle
Journal:  Eukaryot Cell       Date:  2012-08-17

8.  The transposon impala is activated by low temperatures: use of a controlled transposition system to identify genes critical for viability of Aspergillus fumigatus.

Authors:  Paul D Carr; Danny Tuckwell; Peter M Hey; Laurence Simon; Christophe d'Enfert; Mike Birch; Jason D Oliver; Michael J Bromley
Journal:  Eukaryot Cell       Date:  2010-01-22

9.  Identification of a putative Crf splice variant and generation of recombinant antibodies for the specific detection of Aspergillus fumigatus.

Authors:  Mark Schütte; Philippe Thullier; Thibaut Pelat; Xenia Wezler; Philip Rosenstock; Dominik Hinz; Martina Inga Kirsch; Mike Hasenberg; Ronald Frank; Thomas Schirrmann; Matthias Gunzer; Michael Hust; Stefan Dübel
Journal:  PLoS One       Date:  2009-08-13       Impact factor: 3.240

10.  Integrative analysis of the heat shock response in Aspergillus fumigatus.

Authors:  Daniela Albrecht; Reinhard Guthke; Axel A Brakhage; Olaf Kniemeyer
Journal:  BMC Genomics       Date:  2010-01-15       Impact factor: 3.969
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