Literature DB >> 14681378

The Pfam protein families database.

Alex Bateman1, Lachlan Coin, Richard Durbin, Robert D Finn, Volker Hollich, Sam Griffiths-Jones, Ajay Khanna, Mhairi Marshall, Simon Moxon, Erik L L Sonnhammer, David J Studholme, Corin Yeats, Sean R Eddy.   

Abstract

Pfam is a large collection of protein families and domains. Over the past 2 years the number of families in Pfam has doubled and now stands at 6190 (version 10.0). Methodology improvements for searching the Pfam collection locally as well as via the web are described. Other recent innovations include modelling of discontinuous domains allowing Pfam domain definitions to be closer to those found in structure databases. Pfam is available on the web in the UK (http://www.sanger.ac.uk/Software/Pfam/), the USA (http://pfam.wustl.edu/), France (http://pfam.jouy.inra.fr/) and Sweden (http://Pfam.cgb.ki.se/).

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Year:  2004        PMID： 14681378      PMCID： PMC308855          DOI： 10.1093/nar/gkh121

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  11 in total

1.  ProDom and ProDom-CG: tools for protein domain analysis and whole genome comparisons.

Authors:  F Corpet; F Servant; J Gouzy; D Kahn
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  The Pfam protein families database.

Authors:  A Bateman; E Birney; R Durbin; S R Eddy; K L Howe; E L Sonnhammer
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

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Authors:  R A Laskowski
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

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Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

5.  Enhanced protein domain discovery by using language modeling techniques from speech recognition.

Authors:  Lachlan Coin; Alex Bateman; Richard Durbin
Journal:  Proc Natl Acad Sci U S A       Date:  2003-03-31       Impact factor: 11.205

6.  The CATH database: an extended protein family resource for structural and functional genomics.

Authors:  F M G Pearl; C F Bennett; J E Bray; A P Harrison; N Martin; A Shepherd; I Sillitoe; J Thornton; C A Orengo
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

7.  The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003.

Authors:  Brigitte Boeckmann; Amos Bairoch; Rolf Apweiler; Marie-Claude Blatter; Anne Estreicher; Elisabeth Gasteiger; Maria J Martin; Karine Michoud; Claire O'Donovan; Isabelle Phan; Sandrine Pilbout; Michel Schneider
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

8.  E-MSD: the European Bioinformatics Institute Macromolecular Structure Database.

Authors:  H Boutselakis; D Dimitropoulos; J Fillon; A Golovin; K Henrick; A Hussain; J Ionides; M John; P A Keller; E Krissinel; P McNeil; A Naim; R Newman; T Oldfield; J Pineda; A Rachedi; J Copeland; A Sitnov; S Sobhany; A Suarez-Uruena; J Swaminathan; M Tagari; J Tate; S Tromm; S Velankar; W Vranken
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

9.  Recent improvements to the SMART domain-based sequence annotation resource.

Authors:  Ivica Letunic; Leo Goodstadt; Nicholas J Dickens; Tobias Doerks; Joerg Schultz; Richard Mott; Francesca Ciccarelli; Richard R Copley; Chris P Ponting; Peer Bork
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

10.  The Pfam protein families database.

Authors:  Alex Bateman; Ewan Birney; Lorenzo Cerruti; Richard Durbin; Laurence Etwiller; Sean R Eddy; Sam Griffiths-Jones; Kevin L Howe; Mhairi Marshall; Erik L L Sonnhammer
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971
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Journal:  Extremophiles       Date:  2018-03-20       Impact factor: 2.395
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