Literature DB >> 14675766

Thiamine-regulated gene expression of Aspergillus oryzae thiA requires splicing of the intron containing a riboswitch-like domain in the 5'-UTR.

Takafumi Kubodera1, Mutsumi Watanabe, Kumi Yoshiuchi, Nobuo Yamashita, Akira Nishimura, Susumu Nakai, Katsuya Gomi, Hideo Hanamoto.   

Abstract

Exogenous thiamine regulates Aspergillus oryzae thiA, which is involved in thiamine synthesis. One of the two introns in its 5'-untranslated region (5'-UTR) contains motifs (regions A and B) highly conserved among fungal thiamine biosynthesis genes. Deletion of either region relieved the repression by thiamine and thiamine inhibited intron splicing, suggesting that regions A and B are required for efficient splicing. Furthermore, transcript splicing was essential for thiA gene expression. These observations suggest a novel gene expression regulatory mechanism in filamentous fungi, in which exogenous thiamine controls intron splicing to regulate gene expression. Interestingly, regions A and B constitute a part of a thiamine pyrophosphate-binding riboswitch-like domain that has been quite recently found in the 5'-UTR of thiA.

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Year:  2003        PMID: 14675766     DOI: 10.1016/s0014-5793(03)01335-8

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  60 in total

Review 1.  A renaissance of metabolite sensing and signaling: from modular domains to riboswitches.

Authors:  George W Templeton; Greg B G Moorhead
Journal:  Plant Cell       Date:  2004-09       Impact factor: 11.277

Review 2.  Riboswitches and the RNA world.

Authors:  Ronald R Breaker
Journal:  Cold Spring Harb Perspect Biol       Date:  2012-02-01       Impact factor: 10.005

3.  Identification of ligand analogues that control c-di-GMP riboswitches.

Authors:  Kazuhiro Furukawa; Hongzhou Gu; Narasimhan Sudarsan; Yoshihiro Hayakawa; Mamoru Hyodo; Ronald R Breaker
Journal:  ACS Chem Biol       Date:  2012-06-19       Impact factor: 5.100

4.  An artificial riboswitch for controlling pre-mRNA splicing.

Authors:  Dong-Suk Kim; Veronica Gusti; Sailesh G Pillai; Rajesh K Gaur
Journal:  RNA       Date:  2005-11       Impact factor: 4.942

5.  Core requirements of the adenine riboswitch aptamer for ligand binding.

Authors:  Jean-François Lemay; Daniel A Lafontaine
Journal:  RNA       Date:  2007-01-02       Impact factor: 4.942

6.  Structural basis for gene regulation by a thiamine pyrophosphate-sensing riboswitch.

Authors:  Alexander Serganov; Anna Polonskaia; Anh Tuân Phan; Ronald R Breaker; Dinshaw J Patel
Journal:  Nature       Date:  2006-05-21       Impact factor: 49.962

7.  A loop loop interaction and a K-turn motif located in the lysine aptamer domain are important for the riboswitch gene regulation control.

Authors:  Simon Blouin; Daniel A Lafontaine
Journal:  RNA       Date:  2007-06-21       Impact factor: 4.942

8.  Riboswitch control of gene expression in plants by splicing and alternative 3' end processing of mRNAs.

Authors:  Andreas Wachter; Meral Tunc-Ozdemir; Beth C Grove; Pamela J Green; David K Shintani; Ronald R Breaker
Journal:  Plant Cell       Date:  2007-11-09       Impact factor: 11.277

Review 9.  The structural and functional diversity of metabolite-binding riboswitches.

Authors:  Adam Roth; Ronald R Breaker
Journal:  Annu Rev Biochem       Date:  2009       Impact factor: 23.643

Review 10.  Role of RNA structure in regulating pre-mRNA splicing.

Authors:  M Bryan Warf; J Andrew Berglund
Journal:  Trends Biochem Sci       Date:  2009-12-01       Impact factor: 13.807

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