Literature DB >> 14675550

The positions of radical intermediates in the active sites of adenosylcobalamin-dependent enzymes.

George H Reed1, Steven O Mansoorabadi.   

Abstract

The radical intermediates generated during the catalytic cycles of adenosylcobalamin-dependent enzymes occur in pairs. The positions of radicals residing on the cofactor, substrate or protein, relative to the position of the low-spin Co(2+) from the cob(II)alamin intermediate, can be extracted from electron paramagnetic resonance (EPR) spectra of the spin-coupled pairs. Examples of radical-Co(2+) pairs that span a range of interspin distances from 3 to 13A have been presented. Interspin distances greater than 5A require motion of one or more of the participating species. EPR spectroscopy provides a convenient means to determine the structures of these transient intermediates.

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Year:  2003        PMID: 14675550      PMCID: PMC3130341          DOI: 10.1016/j.sbi.2003.10.011

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  22 in total

1.  Cobamides and ribonucleotide reduction. XII. The electron paramagnetic resonance spectrum of "active coenzyme B12".

Authors:  W H Orme-Johnson; H Beinert; R L Blakley
Journal:  J Biol Chem       Date:  1974-04-25       Impact factor: 5.157

2.  A novel reaction between adenosylcobalamin and 2-methyleneglutarate catalyzed by glutamate mutase.

Authors:  Marja S Huhta; Daniele Ciceri; Bernard T Golding; E Neil G Marsh
Journal:  Biochemistry       Date:  2002-03-05       Impact factor: 3.162

3.  Spin-spin interaction in ethanolamine deaminase.

Authors:  S C Ke
Journal:  Biochim Biophys Acta       Date:  2003-03-17

4.  Analysis of the electron paramagnetic resonance spectrum of a radical intermediate in the coenzyme B(12)-dependent ethanolamine ammonia-lyase catalyzed reaction of S-2-aminopropanol.

Authors:  Vahe Bandarian; George H Reed
Journal:  Biochemistry       Date:  2002-07-09       Impact factor: 3.162

5.  Evidence from electron paramagnetic resonance spectroscopy of the participation of radical intermediates in the reaction catalyzed by methylmalonyl-coenzyme A mutase.

Authors:  R Padmakumar; R Banerjee
Journal:  J Biol Chem       Date:  1995-04-21       Impact factor: 5.157

6.  Thiyl radicals in ribonucleotide reductases.

Authors:  S Licht; G J Gerfen; J Stubbe
Journal:  Science       Date:  1996-01-26       Impact factor: 47.728

7.  Electron paramagnetic resonance studies of the methylmalonyl-CoA mutase reaction. Evidence for radical intermediates using natural and artificial substrates as well as the competitive inhibitor 3-carboxypropyl-CoA.

Authors:  Y Zhao; A Abend; M Kunz; P Such; J Rétey
Journal:  Eur J Biochem       Date:  1994-11-01

8.  Adenosylcobalamin and cob(II)alamin as prosthetic groups of 2-methyleneglutarate mutase from Clostridium barkeri.

Authors:  C Michel; S P Albracht; W Buckel
Journal:  Eur J Biochem       Date:  1992-04-15

9.  Characterization of the coenzyme-B12-dependent glutamate mutase from Clostridium cochlearium produced in Escherichia coli.

Authors:  O Zelder; B Beatrix; U Leutbecher; W Buckel
Journal:  Eur J Biochem       Date:  1994-12-01

10.  The synthetic substrate succinyl(carbadethia)-CoA generates cob(II)alamin on adenosylcobalamin-dependent methylmalonyl-CoA mutase.

Authors:  N H Keep; G A Smith; M C Evans; G P Diakun; P F Leadlay
Journal:  Biochem J       Date:  1993-10-15       Impact factor: 3.857

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  6 in total

1.  Characterization of a succinyl-CoA radical-cob(II)alamin spin triplet intermediate in the reaction catalyzed by adenosylcobalamin-dependent methylmalonyl-CoA mutase.

Authors:  Steven O Mansoorabadi; Rugmini Padmakumar; Nisso Fazliddinova; Monica Vlasie; Ruma Banerjee; George H Reed
Journal:  Biochemistry       Date:  2005-03-08       Impact factor: 3.162

2.  NMR observations of 13C-enriched coenzyme B12 bound to the ribonucleotide reductase from Lactobacillus leichmannii.

Authors:  Kenneth L Brown; Jing Li; Xiang Zou
Journal:  Inorg Chem       Date:  2006-11-13       Impact factor: 5.165

3.  Glutamate 338 is an electrostatic facilitator of C-Co bond breakage in a dynamic/electrostatic model of catalysis by ornithine aminomutase.

Authors:  Binuraj R K Menon; Navya Menon; Karl Fisher; Stephen E J Rigby; David Leys; Nigel S Scrutton
Journal:  FEBS J       Date:  2015-02-12       Impact factor: 5.542

Review 4.  Large-scale domain motions and pyridoxal-5'-phosphate assisted radical catalysis in coenzyme B12-dependent aminomutases.

Authors:  Amarendra Nath Maity; Yung-Han Chen; Shyue-Chu Ke
Journal:  Int J Mol Sci       Date:  2014-02-20       Impact factor: 5.923

5.  Mechanism of radical-based catalysis in the reaction catalyzed by adenosylcobalamin-dependent ornithine 4,5-aminomutase.

Authors:  Kirsten R Wolthers; Stephen E J Rigby; Nigel S Scrutton
Journal:  J Biol Chem       Date:  2008-10-22       Impact factor: 5.157

6.  A conformational sampling model for radical catalysis in pyridoxal phosphate- and cobalamin-dependent enzymes.

Authors:  Binuraj R K Menon; Karl Fisher; Stephen E J Rigby; Nigel S Scrutton; David Leys
Journal:  J Biol Chem       Date:  2014-09-11       Impact factor: 5.157

  6 in total

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