Literature DB >> 12595098

Spin-spin interaction in ethanolamine deaminase.

S C Ke1.   

Abstract

The adenosylcobalamin coenzyme-dependent ethanolamine deaminase from Salmonella typhimurium catalyzes the deamination of aminoethanol to acetaldehyde and ammonia. The radical intermediate observed during steady state turnover of substrate aminoethanol has been characterized by continuous wave electron paramagnetic resonance (EPR) spectroscopy [J. Am. Chem. Soc. 121 (1999) 10522]. This study presents simulations of EPR spectra of this radical intermediate. Quantitative fits to the EPR spectra are achieved with a model of isotropic exchange and magnetic dipolar interaction between the substrate-derived radical and the Co(II) in the corrin ring. The simulated parameters are compared with those of substrate analog 2-aminopropanol-derived radical in the same enzyme. The comparison confirms that the aminoethanol-derived product radical interacts more weakly with the Co(II) than the 2-aminopropanol-derived radical and suggests that the reduction of isotropic exchange between the aminoethanol-derived product radical and the Co(II) is probably due to orientational-dependent wave function overlap. Successful fits to the radical line shapes of different isotope substitutions unequivocally establish that the observed radical intermediate is an pi-electron-based product radical. The derived principal hyperfine values for the 13C(alpha) and 1H(alpha) nucleus are consistent with previous electron nuclear double resonance (ENDOR) studies on similar radicals, thus providing reliable experimental hyperfine coupling constants for comparison with quantum mechanical-based calculations to gain further insight into the molecular structure of the observed radical.

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Year:  2003        PMID: 12595098     DOI: 10.1016/s0304-4165(03)00006-0

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  9 in total

Review 1.  The positions of radical intermediates in the active sites of adenosylcobalamin-dependent enzymes.

Authors:  George H Reed; Steven O Mansoorabadi
Journal:  Curr Opin Struct Biol       Date:  2003-12       Impact factor: 6.809

2.  Resolution and Characterization of Chemical Steps in Enzyme Catalytic Sequences by Using Low-Temperature and Time-Resolved, Full-Spectrum EPR Spectroscopy in Fluid Cryosolvent and Frozen Solution Systems.

Authors:  Miao Wang; Chen Zhu; Meghan Kohne; Kurt Warncke
Journal:  Methods Enzymol       Date:  2015-09-14       Impact factor: 1.600

3.  Reaction of the Co(II)-substrate radical pair catalytic intermediate in coenzyme B12-dependent ethanolamine ammonia-lyase in frozen aqueous solution from 190 to 217 K.

Authors:  Chen Zhu; Kurt Warncke
Journal:  Biophys J       Date:  2008-09-19       Impact factor: 4.033

4.  Kinetic isolation and characterization of the radical rearrangement step in coenzyme B12-dependent ethanolamine ammonia-lyase.

Authors:  Chen Zhu; Kurt Warncke
Journal:  J Am Chem Soc       Date:  2010-07-21       Impact factor: 15.419

5.  Deuterium Kinetic Isotope Effects Resolve Low-Temperature Substrate Radical Reaction Pathways and Steps in B12-Dependent Ethanolamine Ammonia-Lyase.

Authors:  Meghan Kohne; Wei Li; Chen Zhu; Kurt Warncke
Journal:  Biochemistry       Date:  2019-08-16       Impact factor: 3.162

6.  Crystal structures of ethanolamine ammonia-lyase complexed with coenzyme B12 analogs and substrates.

Authors:  Naoki Shibata; Hiroko Tamagaki; Naoki Hieda; Keita Akita; Hirofumi Komori; Yasuhito Shomura; Shin-Ichi Terawaki; Koichi Mori; Noritake Yasuoka; Yoshiki Higuchi; Tetsuo Toraya
Journal:  J Biol Chem       Date:  2010-06-01       Impact factor: 5.157

7.  Resolution and characterization of contributions of select protein and coupled solvent configurational fluctuations to radical rearrangement catalysis in coenzyme B12-dependent ethanolamine ammonia-lyase.

Authors:  Meghan Kohne; Wei Li; Alina Ionescu; Chen Zhu; Kurt Warncke
Journal:  Methods Enzymol       Date:  2022-01-29       Impact factor: 1.682

8.  Identification of the substrate radical intermediate derived from ethanolamine during catalysis by ethanolamine ammonia-lyase.

Authors:  Güneş Bender; Russell R Poyner; George H Reed
Journal:  Biochemistry       Date:  2008-10-01       Impact factor: 3.162

Review 9.  Large-scale domain motions and pyridoxal-5'-phosphate assisted radical catalysis in coenzyme B12-dependent aminomutases.

Authors:  Amarendra Nath Maity; Yung-Han Chen; Shyue-Chu Ke
Journal:  Int J Mol Sci       Date:  2014-02-20       Impact factor: 5.923

  9 in total

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