Literature DB >> 12093274

Analysis of the electron paramagnetic resonance spectrum of a radical intermediate in the coenzyme B(12)-dependent ethanolamine ammonia-lyase catalyzed reaction of S-2-aminopropanol.

Vahe Bandarian1, George H Reed.   

Abstract

The structure of the steady-state radical intermediate in the deamination of S-2-aminopropanol catalyzed by ethanolamine ammonia-lyase (EAL) from Salmonella typhimurium has been probed by electron paramagnetic resonance (EPR) spectroscopy using isotopically labeled forms of the substrate and of the adenosylcobalamin cofactor. Electron spin-spin coupling between the radical, centered on the carbon skeleton of the substrate, and the low-spin Co(2+) in cob(II)alamin (B(12r)) produces a dominant splitting of the EPR signals of both the radical and the Co(2+). Analysis of the exchange and dipole-dipole contributions to the spin-spin coupling indicates that the two paramagnetic centers are separated by approximately 11 A. Experiments with (13)C- and with (2)H-labeled forms of S-2-aminopropanol show that the radical is centered on C1 of the carbon skeleton of the substrate in agreement with an earlier report [Babior, B. M., Moss, T. H., Orme-Johnson, W. H., and Beinert, H., (1974) J. Biol. Chem. 249, 4537-4544]. Experiments with perdeutero-S-2-aminopropanol and [2-(15)N]-perdeutero-S-2-aminopropanol reveal a strong hyperfine splitting from the substrate nitrogen, which indicates that the radical is the initial substrate radical created by abstraction of a hydrogen atom from C1 of S-2-aminopropanol. The strong nitrogen hyperfine splitting further indicates that the amino substituent at C2 is approximately eclipsed with respect to the half-occupied p orbital at C1. Experiments with adenosylcobalamin enriched in (15)N in the dimethylbenzimidazole moiety show that the axial base of the cofactor remains attached to the Co(2+) in a functional steady-state reaction intermediate.

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Year:  2002        PMID: 12093274     DOI: 10.1021/bi0201217

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  18 in total

Review 1.  The positions of radical intermediates in the active sites of adenosylcobalamin-dependent enzymes.

Authors:  George H Reed; Steven O Mansoorabadi
Journal:  Curr Opin Struct Biol       Date:  2003-12       Impact factor: 6.809

2.  Resolution and Characterization of Chemical Steps in Enzyme Catalytic Sequences by Using Low-Temperature and Time-Resolved, Full-Spectrum EPR Spectroscopy in Fluid Cryosolvent and Frozen Solution Systems.

Authors:  Miao Wang; Chen Zhu; Meghan Kohne; Kurt Warncke
Journal:  Methods Enzymol       Date:  2015-09-14       Impact factor: 1.600

3.  Characterization of protein contributions to cobalt-carbon bond cleavage catalysis in adenosylcobalamin-dependent ethanolamine ammonia-lyase by using photolysis in the ternary complex.

Authors:  Wesley D Robertson; Miao Wang; Kurt Warncke
Journal:  J Am Chem Soc       Date:  2011-04-14       Impact factor: 15.419

4.  Mechanistic Enzymology of the Radical SAM Enzyme DesII.

Authors:  Mark W Ruszczycky; Hung-Wen Liu
Journal:  Isr J Chem       Date:  2015-02-20       Impact factor: 3.333

5.  Spectroscopic Studies of the EutT Adenosyltransferase from Salmonella enterica: Evidence of a Tetrahedrally Coordinated Divalent Transition Metal Cofactor with Cysteine Ligation.

Authors:  Ivan G Pallares; Theodore C Moore; Jorge C Escalante-Semerena; Thomas C Brunold
Journal:  Biochemistry       Date:  2017-01-03       Impact factor: 3.162

6.  Radical triplets and suicide inhibition in reactions of 4-thia-D- and 4-thia-L-lysine with lysine 5,6-aminomutase.

Authors:  Kuo-Hsiang Tang; Steven O Mansoorabadi; George H Reed; Perry A Frey
Journal:  Biochemistry       Date:  2009-09-01       Impact factor: 3.162

7.  Reaction of the Co(II)-substrate radical pair catalytic intermediate in coenzyme B12-dependent ethanolamine ammonia-lyase in frozen aqueous solution from 190 to 217 K.

Authors:  Chen Zhu; Kurt Warncke
Journal:  Biophys J       Date:  2008-09-19       Impact factor: 4.033

8.  Probing nitrogen-sensitive steps in the free-radical-mediated deamination of amino alcohols by ethanolamine ammonia-lyase.

Authors:  Russell R Poyner; Mark A Anderson; Vahe Bandarian; W Wallace Cleland; George H Reed
Journal:  J Am Chem Soc       Date:  2006-06-07       Impact factor: 15.419

9.  Protein Configurational States Guide Radical Rearrangement Catalysis in Ethanolamine Ammonia-Lyase.

Authors:  Neslihan Ucuncuoglu; Kurt Warncke
Journal:  Biophys J       Date:  2018-06-19       Impact factor: 4.033

10.  Identification of the substrate radical intermediate derived from ethanolamine during catalysis by ethanolamine ammonia-lyase.

Authors:  Güneş Bender; Russell R Poyner; George H Reed
Journal:  Biochemistry       Date:  2008-10-01       Impact factor: 3.162

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