Literature DB >> 14668364

The Ras/PKA signaling pathway may control RNA polymerase II elongation via the Spt4p/Spt5p complex in Saccharomyces cerevisiae.

Susie C Howard1, Arelis Hester, Paul K Herman.   

Abstract

The Ras signaling pathway in Saccharomyces cerevisiae controls cell growth via the cAMP-dependent protein kinase, PKA. Recent work has indicated that these effects on growth are due, in part, to the regulation of activities associated with the C-terminal domain (CTD) of the largest subunit of RNA polymerase II. However, the precise target of these Ras effects has remained unknown. This study suggests that Ras/PKA activity regulates the elongation step of the RNA polymerase II transcription process. Several lines of evidence indicate that Spt5p in the Spt4p/Spt5p elongation factor is the likely target of this control. First, the growth of spt4 and spt5 mutants was found to be very sensitive to changes in Ras/PKA signaling activity. Second, mutants with elevated levels of Ras activity shared a number of specific phenotypes with spt5 mutants and vice versa. Finally, Spt5p was efficiently phosphorylated by PKA in vitro. Altogether, the data suggest that the Ras/PKA pathway might be directly targeting a component of the elongating polymerase complex and that this regulation is important for the normal control of yeast cell growth. These data point out the interesting possibility that signal transduction pathways might directly influence the elongation step of RNA polymerase II transcription.

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Year:  2003        PMID: 14668364      PMCID: PMC1462858     

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  65 in total

1.  A regulatory shortcut between the Snf1 protein kinase and RNA polymerase II holoenzyme.

Authors:  S Kuchin; I Treich; M Carlson
Journal:  Proc Natl Acad Sci U S A       Date:  2000-07-05       Impact factor: 11.205

Review 2.  RNA polymerase II and the integration of nuclear events.

Authors:  Y Hirose; J L Manley
Journal:  Genes Dev       Date:  2000-06-15       Impact factor: 11.361

Review 3.  Control of elongation by RNA polymerase II.

Authors:  J W Conaway; A Shilatifard; A Dvir; R C Conaway
Journal:  Trends Biochem Sci       Date:  2000-08       Impact factor: 13.807

4.  Spt16-Pob3 and the HMG protein Nhp6 combine to form the nucleosome-binding factor SPN.

Authors:  T Formosa; P Eriksson; J Wittmeyer; J Ginn; Y Yu; D J Stillman
Journal:  EMBO J       Date:  2001-07-02       Impact factor: 11.598

Review 5.  Transcription elongation and human disease.

Authors:  J W Conaway; R C Conaway
Journal:  Annu Rev Biochem       Date:  1999       Impact factor: 23.643

6.  A C. elegans mediator protein confers regulatory selectivity on lineage-specific expression of a transcription factor gene.

Authors:  H Zhang; S W Emmons
Journal:  Genes Dev       Date:  2000-09-01       Impact factor: 11.361

7.  FACT relieves DSIF/NELF-mediated inhibition of transcriptional elongation and reveals functional differences between P-TEFb and TFIIH.

Authors:  T Wada; G Orphanides; J Hasegawa; D K Kim; D Shima; Y Yamaguchi; A Fukuda; K Hisatake; S Oh; D Reinberg; H Handa
Journal:  Mol Cell       Date:  2000-06       Impact factor: 17.970

8.  Saccharomyces cerevisiae transcription elongation mutants are defective in PUR5 induction in response to nucleotide depletion.

Authors:  R J Shaw; D Reines
Journal:  Mol Cell Biol       Date:  2000-10       Impact factor: 4.272

9.  Synthetic lethal interactions suggest a role for the Saccharomyces cerevisiae Rtf1 protein in transcription elongation.

Authors:  P J Costa; K M Arndt
Journal:  Genetics       Date:  2000-10       Impact factor: 4.562

10.  A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae.

Authors:  R S Sikorski; P Hieter
Journal:  Genetics       Date:  1989-05       Impact factor: 4.562

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  15 in total

1.  The Ras/cAMP-dependent protein kinase signaling pathway regulates an early step of the autophagy process in Saccharomyces cerevisiae.

Authors:  Yelena V Budovskaya; Joseph S Stephan; Fulvio Reggiori; Daniel J Klionsky; Paul K Herman
Journal:  J Biol Chem       Date:  2004-03-11       Impact factor: 5.157

2.  Antagonistic interactions between the cAMP-dependent protein kinase and Tor signaling pathways modulate cell growth in Saccharomyces cerevisiae.

Authors:  Vidhya Ramachandran; Paul K Herman
Journal:  Genetics       Date:  2010-11-15       Impact factor: 4.562

Review 3.  Transcriptional regulation in yeast during diauxic shift and stationary phase.

Authors:  Luciano Galdieri; Swati Mehrotra; Sean Yu; Ales Vancura
Journal:  OMICS       Date:  2010-09-23

4.  The Catalytic Activity of the Ubp3 Deubiquitinating Protease Is Required for Efficient Stress Granule Assembly in Saccharomyces cerevisiae.

Authors:  Regina Nostramo; Sapna N Varia; Bo Zhang; Megan M Emerson; Paul K Herman
Journal:  Mol Cell Biol       Date:  2015-10-26       Impact factor: 4.272

5.  Using substrate-binding variants of the cAMP-dependent protein kinase to identify novel targets and a kinase domain important for substrate interactions in Saccharomyces cerevisiae.

Authors:  Stephen J Deminoff; Susie C Howard; Arelis Hester; Sarah Warner; Paul K Herman
Journal:  Genetics       Date:  2006-06-04       Impact factor: 4.562

6.  Distal recognition sites in substrates are required for efficient phosphorylation by the cAMP-dependent protein kinase.

Authors:  Stephen J Deminoff; Vidhya Ramachandran; Paul K Herman
Journal:  Genetics       Date:  2009-04-13       Impact factor: 4.562

7.  Neurofibromin homologs Ira1 and Ira2 affect glycerophosphoinositol production and transport in Saccharomyces cerevisiae.

Authors:  Andrew C Bishop; Beth A Surlow; Puneet Anand; Katherine Hofer; Matthew Henkel; Jana Patton-Vogt
Journal:  Eukaryot Cell       Date:  2009-08-28

8.  Increased phosphoglucomutase activity suppresses the galactose growth defect associated with elevated levels of Ras signaling in S. cerevisiae.

Authors:  Susie C Howard; Stephen J Deminoff; Paul K Herman
Journal:  Curr Genet       Date:  2005-11-16       Impact factor: 3.886

9.  The Saccharomyces cerevisiae Nrd1-Nab3 transcription termination pathway acts in opposition to Ras signaling and mediates response to nutrient depletion.

Authors:  Miranda M Darby; Leo Serebreni; Xuewen Pan; Jef D Boeke; Jeffry L Corden
Journal:  Mol Cell Biol       Date:  2012-03-19       Impact factor: 4.272

10.  Discovery of a small molecule targeting IRA2 deletion in budding yeast and neurofibromin loss in malignant peripheral nerve sheath tumor cells.

Authors:  Matthew Wood; Melissa Rawe; Gunnar Johansson; Shu Pang; Ryan S Soderquist; Ami V Patel; Sandra Nelson; William Seibel; Nancy Ratner; Yolanda Sanchez
Journal:  Mol Cancer Ther       Date:  2011-06-22       Impact factor: 6.261

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