Literature DB >> 14664583

Infrared study of the stability and folding kinetics of a 15-residue beta-hairpin.

Yao Xu1, Rolando Oyola, Feng Gai.   

Abstract

The thermal stability and folding kinetics of a 15-residue beta-hairpin (SESYINPDGTWTVTE) have been studied by using infrared (IR) spectroscopy coupled with laser-induced temperature-jump (T-jump) technique for rapid folding-unfolding initiation. An alternative method based on analyzing IR difference spectra was also introduced to obtain thermodynamic properties of beta-sheets, which complements the commonly used circular dichroism (CD) and fluorescence techniques. Equilibrium IR measurements indicate that the thermal unfolding of this beta-hairpin is fairly broad. However, it can be described by a two-state transition with a thermal melting temperature of approximately 29 degrees C. Time-resolved IR measurements following a T-jump, probed at 1634 cm(-1), indicate that the folding of this beta-hairpin follows first-order kinetics and is amazingly fast. At 300 K, the folding time is approximately 0.8 micros, which is only 2-3 times slower than that of alpha-helix formation. Additionally, the energetic barrier for folding is small (approximately 2 kcal mol(-1)). These results, in conjunction with results from other studies, support a view that the details of native contacts play a dominant role in the kinetics of beta-hairpin folding.

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Year:  2003        PMID: 14664583     DOI: 10.1021/ja037053b

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  24 in total

1.  Stability and folding dynamics of polyglutamic acid.

Authors:  Carsten Krejtschi; Karin Hauser
Journal:  Eur Biophys J       Date:  2011-01-28       Impact factor: 1.733

2.  Measuring the refolding of beta-sheets with different turn sequences on a nanosecond time scale.

Authors:  Rita P-Y Chen; Joseph J-T Huang; Hsin-Liang Chen; Howard Jan; Marappan Velusamy; Chung-Tien Lee; Wunshain Fann; Randy W Larsen; Sunney I Chan
Journal:  Proc Natl Acad Sci U S A       Date:  2004-05-03       Impact factor: 11.205

Review 3.  Spectroscopic studies of protein folding: linear and nonlinear methods.

Authors:  Arnaldo L Serrano; Matthias M Waegele; Feng Gai
Journal:  Protein Sci       Date:  2011-12-28       Impact factor: 6.725

4.  Achieving secondary structural resolution in kinetic measurements of protein folding: a case study of the folding mechanism of Trp-cage.

Authors:  Robert M Culik; Arnaldo L Serrano; Michelle R Bunagan; Feng Gai
Journal:  Angew Chem Int Ed Engl       Date:  2011-09-29       Impact factor: 15.336

5.  Understanding the key factors that control the rate of beta-hairpin folding.

Authors:  Deguo Du; Yongjin Zhu; Cheng-Yen Huang; Feng Gai
Journal:  Proc Natl Acad Sci U S A       Date:  2004-11-01       Impact factor: 11.205

6.  Hairpin folding rates reflect mutations within and remote from the turn region.

Authors:  Katherine A Olsen; R Matthew Fesinmeyer; James M Stewart; Niels H Andersen
Journal:  Proc Natl Acad Sci U S A       Date:  2005-10-14       Impact factor: 11.205

7.  Chemical shifts provide fold populations and register of beta hairpins and beta sheets.

Authors:  R Matthew Fesinmeyer; F Michael Hudson; Katherine A Olsen; George W N White; Anna Euser; Niels H Andersen
Journal:  J Biomol NMR       Date:  2005-12       Impact factor: 2.835

8.  Role of hydrophobic interactions and salt-bridges in beta-hairpin folding.

Authors:  Aswin Sai Narain Seshasayee; Krishnan Raghunathan; Karthikeyan Sivaraman; Gautam Pennathur
Journal:  J Mol Model       Date:  2005-10-18       Impact factor: 1.810

9.  His26 protonation in cytochrome c triggers microsecond β-sheet formation and heme exposure: implications for apoptosis.

Authors:  Gurusamy Balakrishnan; Ying Hu; Thomas G Spiro
Journal:  J Am Chem Soc       Date:  2012-11-06       Impact factor: 15.419

10.  Early turn formation and chain collapse drive fast folding of the major cold shock protein CspA of Escherichia coli.

Authors:  Dung M Vu; Scott H Brewer; R Brian Dyer
Journal:  Biochemistry       Date:  2012-11-01       Impact factor: 3.162

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