Literature DB >> 1465110

Organization of specific DNA sequence elements in the region of the replication origin and matrix attachment site in the chicken alpha-globin gene domain.

W A Krajewski1, S V Razin.   

Abstract

The distribution of specific DNA sequence elements in a 2.9 kb HindIII fragment of chicken DNA containing the replication origin and the upstream matrix attachment site (MAR) of the alpha-globin gene domain was investigated. The fragment was shown to contain a CR1-type repetitive element and two stably bent DNA sequences. One of them colocalizes with the previously described MAR element and with the recognition site for a proliferating-cell-specific, DNA-binding protein. The melting pattern of a set of subfragments of the region proved to be non random. No correlation between the distribution of readily melting sequences and bent DNA was found. The possible importance of curved, low-melting and repetitive DNA sequences for the organization of the upstream boundary of the alpha-globin gene domain and the function of the replication origin is discussed.

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Year:  1992        PMID： 1465110     DOI： 10.1007/bf00279384

Source DB:  PubMed          Journal:  Mol Gen Genet        ISSN： 0026-8925


  38 in total

1.  RIP60, a mammalian origin-binding protein, enhances DNA bending near the dihydrofolate reductase origin of replication.

Authors:  M S Caddle; L Dailey; N H Heintz
Journal:  Mol Cell Biol       Date:  1990-12       Impact factor: 4.272

Review 2.  New beginnings in studies of eukaryotic DNA replication origins.

Authors:  R M Umek; M H Linskens; D Kowalski; J A Huberman
Journal:  Biochim Biophys Acta       Date:  1989-01-23

3.  Nuclear matrix attachment regions and topoisomerase II binding and reaction sites in the vicinity of a chicken DNA replication origin.

Authors:  S V Razin; Y S Vassetzky; R Hancock
Journal:  Biochem Biophys Res Commun       Date:  1991-05-31       Impact factor: 3.575

4.  A non-curved chicken lysozyme 5' matrix attachment site is 3' followed by a strongly curved DNA sequence.

Authors:  J P von Kries; L Phi-Van; S Diekmann; W H Strätling
Journal:  Nucleic Acids Res       Date:  1990-07-11       Impact factor: 16.971

5.  Characterization of DNA pattern in the site of permanent attachment to the nuclear matrix located in the vicinity of replication origin.

Authors:  A G Kalandadze; S A Bushara; Y S Vassetzky; S V Razin
Journal:  Biochem Biophys Res Commun       Date:  1990-04-16       Impact factor: 3.575

Review 6.  Transcriptional elements as components of eukaryotic origins of DNA replication.

Authors:  M L DePamphilis
Journal:  Cell       Date:  1988-03-11       Impact factor: 41.582

7.  Detection, sequence patterns and function of unusual DNA structures.

Authors:  J N Anderson
Journal:  Nucleic Acids Res       Date:  1986-11-11       Impact factor: 16.971

8.  Replication origins are attached to the nuclear skeleton.

Authors:  S V Razin; M G Kekelidze; E M Lukanidin; K Scherrer; G P Georgiev
Journal:  Nucleic Acids Res       Date:  1986-10-24       Impact factor: 16.971

9.  Tissue-specific DNA cleavages in the globin chromatin domain introduced by DNAase I.

Authors:  J Stalder; A Larsen; J D Engel; M Dolan; M Groudine; H Weintraub
Journal:  Cell       Date:  1980-06       Impact factor: 41.582

10.  Bent DNA at a yeast autonomously replicating sequence.

Authors:  M Snyder; A R Buchman; R W Davis
Journal:  Nature       Date:  1986 Nov 6-12       Impact factor: 49.962
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  4 in total

1.  A motif within SET-domain proteins binds single-stranded nucleic acids and transcribed and supercoiled DNAs and can interfere with assembly of nucleosomes.

Authors:  Wladyslaw A Krajewski; Tatsuya Nakamura; Alexander Mazo; Eli Canaani
Journal:  Mol Cell Biol       Date:  2005-03       Impact factor: 4.272

2.  Excision close to matrix attachment regions of the entire chicken alpha-globin gene domain by nuclease S1 and characterization of the framing structures.

Authors:  F R Targa; S V Razin; C V de Moura Gallo; K Scherrer
Journal:  Proc Natl Acad Sci U S A       Date:  1994-05-10       Impact factor: 11.205

Review 3.  DNA-protein interactions and spatial organization of DNA.

Authors:  W A Krajewski; S V Razin
Journal:  Mol Biol Rep       Date:  1993-10       Impact factor: 2.316

4.  Intrinsically bent DNA sites in the Drosophila melanogaster third chromosome amplified domain.

Authors:  Fabrícia Gimenes; Mariana Aprígio Assis; Adriana Fiorini; Vânia Aparecida Mareze; Nadia Monesi; Maria Aparecida Fernandez
Journal:  Mol Genet Genomics       Date:  2009-02-15       Impact factor: 3.291
  4 in total

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