Literature DB >> 14645223

The crystal structures of the ferric and ferrous forms of the heme complex of HmuO, a heme oxygenase of Corynebacterium diphtheriae.

Shoko Hirotsu1, Grace C Chu, Masaki Unno, Dong-Sun Lee, Tadashi Yoshida, Sam-Yong Park, Yoshitsugu Shiro, Masao Ikeda-Saito.   

Abstract

Crystal structures of the ferric and ferrous heme complexes of HmuO, a 24-kDa heme oxygenase of Corynebacterium diphtheriae, have been refined to 1.4 and 1.5 A resolution, respectively. The HmuO structures show that the heme group is closely sandwiched between the proximal and distal helices. The imidazole group of His-20 is the proximal heme ligand, which closely eclipses the beta- and delta-meso axis of the porphyrin ring. A long range hydrogen bonding network is present, connecting the iron-bound water ligand to the solvent water molecule. This enables proton transfer from the solvent to the catalytic site, where the oxygen activation occurs. In comparison to the ferric complex, the proximal and distal helices move closer to the heme plane in the ferrous complex. Together with the kinked distal helix, this movement leaves only the alpha-meso carbon atom accessible to the iron-bound dioxygen. The heme pocket architecture is responsible for stabilization of the ferric hydroperoxo-active intermediate by preventing premature heterolytic O-O bond cleavage. This allows the enzyme to oxygenate selectively at the alpha-meso carbon in HmuO catalysis.

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Year:  2003        PMID: 14645223     DOI: 10.1074/jbc.M311631200

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  27 in total

1.  Modulation of the axial water hydrogen-bonding properties by chemical modification of the substrate in resting state, substrate-bound heme oxygenase from Neisseria meningitidis; coupling to the distal H-bond network via ordered water molecules.

Authors:  Li-Hua Ma; Yangzhong Liu; Xuhong Zhang; Tadashi Yoshida; Kevin C Langry; Kevin M Smith; Gerd N La Mar
Journal:  J Am Chem Soc       Date:  2006-05-17       Impact factor: 15.419

Review 2.  Heme enzyme structure and function.

Authors:  Thomas L Poulos
Journal:  Chem Rev       Date:  2014-01-08       Impact factor: 60.622

3.  How active-site protonation state influences the reactivity and ligation of the heme in chlorite dismutase.

Authors:  Bennett R Streit; Béatrice Blanc; Gudrun S Lukat-Rodgers; Kenton R Rodgers; Jennifer L DuBois
Journal:  J Am Chem Soc       Date:  2010-04-28       Impact factor: 15.419

4.  Identification of an Escherichia coli O157:H7 heme oxygenase with tandem functional repeats.

Authors:  Michael D L Suits; Gour P Pal; Kanji Nakatsu; Allan Matte; Miroslaw Cygler; Zongchao Jia
Journal:  Proc Natl Acad Sci U S A       Date:  2005-11-07       Impact factor: 11.205

5.  Solution 1H NMR characterization of substrate-free C. diphtheriae heme oxygenase: pertinence for determining magnetic axes in paramagnetic substrate complexes.

Authors:  Zhenming Du; Masaki Unno; Toshitaka Matsui; Masao Ikeda-Saito; Gerd N La Mar
Journal:  J Inorg Biochem       Date:  2010-07-01       Impact factor: 4.155

6.  Crystal structure of HutZ, a heme storage protein from Vibrio cholerae: A structural mismatch observed in the region of high sequence conservation.

Authors:  Xiuhua Liu; Jing Gong; Tiandi Wei; Zhi Wang; Qian Du; Deyu Zhu; Yan Huang; Sujuan Xu; Lichuan Gu
Journal:  BMC Struct Biol       Date:  2012-09-26

7.  Coupling of the distal hydrogen bond network to the exogenous ligand in substrate-bound, resting state human heme oxygenase.

Authors:  Dungeng Peng; Hiroshi Ogura; Wenfeng Zhu; Li-Hua Ma; John P Evans; Paul R Ortiz de Montellano; Gerd N La Mar
Journal:  Biochemistry       Date:  2009-12-01       Impact factor: 3.162

8.  Characterization of the spontaneous "aging" of the heme oxygenase from the pathological bacterium Neisseria meningitidis via cleavage of the C-terminus in contact with the substrate. Implications for functional studies and the crystal structure.

Authors:  Yangzhong Liu; Li-Hua Ma; Xuhong Zhang; Tadashi Yoshida; James D Satterlee; Gerd N La Mar
Journal:  Biochemistry       Date:  2006-03-28       Impact factor: 3.162

9.  Comparison of apo- and heme-bound crystal structures of a truncated human heme oxygenase-2.

Authors:  Christopher M Bianchetti; Li Yi; Stephen W Ragsdale; George N Phillips
Journal:  J Biol Chem       Date:  2007-10-26       Impact factor: 5.157

10.  Structures of the substrate-free and product-bound forms of HmuO, a heme oxygenase from corynebacterium diphtheriae: x-ray crystallography and molecular dynamics investigation.

Authors:  Masaki Unno; Albert Ardèvol; Carme Rovira; Masao Ikeda-Saito
Journal:  J Biol Chem       Date:  2013-10-08       Impact factor: 5.157

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