Literature DB >> 14645093

Single-crystal EPR study at 95 GHz of the type 2 copper site of the inhibitor-bound quercetin 2,3-dioxygenase.

Maria Fittipaldi1, Roberto A Steiner, Michio Matsushita, Bauke W Dijkstra, Edgar J J Groenen, Martina Huber.   

Abstract

An electron-spin-echo-detected, electron-paramagnetic-resonance study has been performed on the type 2 copper site of quercetin 2,3-dioxygenase from Aspergillus japonicus. In the protein, copper is coordinated by three histidine nitrogens and two sulfurs from the inhibitor diethyldithiocarbamate. A single crystal of the protein was studied at 95 GHz and the complete g-tensor determined. The electron-paramagnetic-resonance data are compatible with two orientations of the principal g-axes in the copper center, one of which is preferred on the basis of an analysis of the copper coordination and the d-orbitals that are involved in the unpaired-electron orbital. For this orientation, the principal z-axis of the g-tensor makes an angle of 19 degrees with the Cu-N(His112) bond and the N of His112 may be considered the axial ligand. The singly occupied molecular orbital contains a linear combination of copper dxy and dyz-orbitals, which are antibonding with atomic orbitals of histidine nitrogens and diethyldithiocarbamate sulfurs. The orientation of the g-tensor for the quercetin 2,3-dioxygenase is compared with that for type 1 copper sites.

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Year:  2003        PMID: 14645093      PMCID: PMC1303705          DOI: 10.1016/S0006-3495(03)74818-8

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  6 in total

1.  Anaerobic enzyme.substrate structures provide insight into the reaction mechanism of the copper-dependent quercetin 2,3-dioxygenase.

Authors:  Roberto A Steiner; Kor H Kalk; Bauke W Dijkstra
Journal:  Proc Natl Acad Sci U S A       Date:  2002-12-16       Impact factor: 11.205

2.  Structural implications derived from the analysis of electron paramagnetic resonance spectra of natural and artificial copper proteins.

Authors:  J Peisach; W E Blumberg
Journal:  Arch Biochem Biophys       Date:  1974-12       Impact factor: 4.013

3.  An ab initio quantum-chemical study of the blue-copper site of azurin.

Authors:  M van Gastel; J W A Coremans; H Sommerdijk; M C van Hemert; E J J Groenen
Journal:  J Am Chem Soc       Date:  2002-03-06       Impact factor: 15.419

4.  Crystal structure of the copper-containing quercetin 2,3-dioxygenase from Aspergillus japonicus.

Authors:  Fabrizia Fusetti; Klaus H Schröter; Roberto A Steiner; Paula I van Noort; Tjaard Pijning; Henriëtte J Rozeboom; Kor H Kalk; Maarten R Egmond; Bauke W Dijkstra
Journal:  Structure       Date:  2002-02       Impact factor: 5.006

5.  EPR characterization of the mononuclear Cu-containing Aspergillus japonicus quercetin 2,3-dioxygenase reveals dramatic changes upon anaerobic binding of substrates.

Authors:  Ingeborg M Kooter; Roberto A Steiner; Bauke W Dijkstra; Paula I van Noort; Maarten R Egmond; Martina Huber
Journal:  Eur J Biochem       Date:  2002-06

6.  Functional analysis of the copper-dependent quercetin 2,3-dioxygenase. 1. Ligand-induced coordination changes probed by X-ray crystallography: inhibition, ordering effect, and mechanistic insights.

Authors:  Roberto A Steiner; Ingeborg M Kooter; Bauke W Dijkstra
Journal:  Biochemistry       Date:  2002-06-25       Impact factor: 3.162

  6 in total
  1 in total

1.  High-potential C112D/M121X (X = M, E, H, L) Pseudomonas aeruginosa azurins.

Authors:  Kyle M Lancaster; Keiko Yokoyama; John H Richards; Jay R Winkler; Harry B Gray
Journal:  Inorg Chem       Date:  2009-02-16       Impact factor: 5.165

  1 in total

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