Literature DB >> 14645074

Molecular orientation and conformation of phosphatidylinositides in membrane mimetics using variable angle sample spinning (VASS) NMR.

Anita I Kishore1, James H Prestegard.   

Abstract

For many biological molecules, determining their geometry as they exist in a membrane environment is a crucial step in understanding their function. Variable angle sample spinning (VASS) NMR provides a new route to obtaining geometry information on membrane-associating molecules; it has been used here to scale and separate anisotropic contributions to phosphorus chemical shifts in NMR spectra of phosphatidylinositol phosphates. The procedure allows spectral assignment via correlation with isotropic chemical shifts and determination of a family of probable headgroup orientations via interpretation of anisotropic shift contributions. The molecules studied include phosphtidylinositol-4-phosphate (PI(4)P) and phosphatidylinositol 4,5-bisphosphate (PI(4,5)P2). A membrane-like environment is provided by a dispersion of alkyl-poly(ethylene) glycols and n-alcohols that forms a field-orienting liquid crystal with a director that can be manipulated by varying the sample spinning axis. The experiments presented indicate that the variable angle sample spinning method will provide a direct approach for assignment and extraction of structural information from membrane-associating biomolecules labeled with a wider variety of NMR active isotopes.

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Year:  2003        PMID: 14645074      PMCID: PMC1303686          DOI: 10.1016/S0006-3495(03)74799-7

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  30 in total

1.  Sign determination of dipolar couplings in field-oriented bicelles by variable angle sample spinning (VASS).

Authors:  F Tian; J A Losonczi; M W Fischer; J H Prestegard
Journal:  J Biomol NMR       Date:  1999-10       Impact factor: 2.835

2.  Imaging membrane protein helical wheels.

Authors:  J Wang; J Denny; C Tian; S Kim; Y Mo; F Kovacs; Z Song; K Nishimura; Z Gan; R Fu; J R Quine; T A Cross
Journal:  J Magn Reson       Date:  2000-05       Impact factor: 2.229

3.  Structure of outer membrane protein A transmembrane domain by NMR spectroscopy.

Authors:  A Arora; F Abildgaard; J H Bushweller; L K Tamm
Journal:  Nat Struct Biol       Date:  2001-04

4.  Using switched angle spinning to simplify NMR spectra of strongly oriented samples.

Authors:  Robert H Havlin; Gregory H J Park; Tanya Mazur; Alexander Pines
Journal:  J Am Chem Soc       Date:  2003-07-02       Impact factor: 15.419

5.  De novo determination of peptide structure with solid-state magic-angle spinning NMR spectroscopy.

Authors:  Chad M Rienstra; Lisa Tucker-Kellogg; Christopher P Jaroniec; Morten Hohwy; Bernd Reif; Michael T McMahon; Bruce Tidor; Tomas Lozano-Pérez; Robert G Griffin
Journal:  Proc Natl Acad Sci U S A       Date:  2002-07-29       Impact factor: 11.205

6.  Phosphorus-31 nuclear magnetic resonance chemical shielding tensors of L-O-serine phosphate and 3'-cytidine monophosphate.

Authors:  S J Kohler; M P Klein
Journal:  J Am Chem Soc       Date:  1977-12-07       Impact factor: 15.419

Review 7.  31P nuclear magnetic resonance and the head group structure of phospholipids in membranes.

Authors:  J Seelig
Journal:  Biochim Biophys Acta       Date:  1978-07-31

8.  Morphology of three lyotropic liquid crystalline biological NMR media studied by translational diffusion anisotropy.

Authors:  S Gaemers; A Bax
Journal:  J Am Chem Soc       Date:  2001-12-12       Impact factor: 15.419

Review 9.  PIP(2) and proteins: interactions, organization, and information flow.

Authors:  Stuart McLaughlin; Jiyao Wang; Alok Gambhir; Diana Murray
Journal:  Annu Rev Biophys Biomol Struct       Date:  2001-10-25

10.  Polyphosphoinositides undergo charge neutralization in the physiological pH range: a 31P-NMR study.

Authors:  P A van Paridon; B de Kruijff; R Ouwerkerk; K W Wirtz
Journal:  Biochim Biophys Acta       Date:  1986-06-11
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  15 in total

1.  New angles for NMR studies of biological molecules.

Authors:  B M Fung
Journal:  Biophys J       Date:  2003-12       Impact factor: 4.033

2.  Structural and mechanistic insights into the association of PKCalpha-C2 domain to PtdIns(4,5)P2.

Authors:  Marta Guerrero-Valero; Cristina Ferrer-Orta; Jordi Querol-Audí; Consuelo Marin-Vicente; Ignacio Fita; Juan C Gómez-Fernández; Nuria Verdaguer; Senena Corbalán-García
Journal:  Proc Natl Acad Sci U S A       Date:  2009-04-03       Impact factor: 11.205

3.  Bicelle-enabled structural studies on a membrane-associated cytochrome B5 by solid-state MAS NMR spectroscopy.

Authors:  Jiadi Xu; Ulrich H N Dürr; Sang-Choul Im; Zhehong Gan; Lucy Waskell; Ayyalusamy Ramamoorthy
Journal:  Angew Chem Int Ed Engl       Date:  2008       Impact factor: 15.336

4.  Very large residual dipolar couplings from deuterated ubiquitin.

Authors:  Joshua M Ward; Nikolai R Skrynnikov
Journal:  J Biomol NMR       Date:  2012-07-25       Impact factor: 2.835

5.  Extension of the GLYCAM06 Biomolecular Force Field to Lipids, Lipid Bilayers and Glycolipids.

Authors:  Matthew B Tessier; Mari L Demarco; Austin B Yongye; Robert J Woods
Journal:  Mol Simul       Date:  2008       Impact factor: 2.178

6.  Modulation of cross polarization in motionally averaged solids by Variable Angle Spinning NMR.

Authors:  Catalina A Espinosa; Pierre Thureau; Rebecca A Shapiro; Ilya M Litvak; Rachel W Martin
Journal:  Chem Phys Lett       Date:  2011-05-27       Impact factor: 2.328

7.  Applications of variable-angle sample spinning experiments to the measurement of scaled residual dipolar couplings and 15N CSA in soluble proteins.

Authors:  Nathalie Lancelot; Karim Elbayed; Martial Piotto
Journal:  J Biomol NMR       Date:  2005-11       Impact factor: 2.835

8.  Phospholipid bilayer surface configuration probed quantitatively by (31)P field-cycling NMR.

Authors:  Mary F Roberts; Alfred G Redfield
Journal:  Proc Natl Acad Sci U S A       Date:  2004-11-29       Impact factor: 11.205

Review 9.  Spatial reorientation experiments for NMR of solids and partially oriented liquids.

Authors:  Rachel W Martin; John E Kelly; Kelsey A Collier
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2015-10-23       Impact factor: 9.795

10.  A voltage-sensing phosphatase, Ci-VSP, which shares sequence identity with PTEN, dephosphorylates phosphatidylinositol 4,5-bisphosphate.

Authors:  Hirohide Iwasaki; Yoshimichi Murata; Youngjun Kim; Md Israil Hossain; Carolyn A Worby; Jack E Dixon; Thomas McCormack; Takehiko Sasaki; Yasushi Okamura
Journal:  Proc Natl Acad Sci U S A       Date:  2008-06-04       Impact factor: 11.205

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