Literature DB >> 14643205

Iplt--image processing library and toolkit for the electron microscopy community.

Ansgar Philippsen1, Andreas D Schenk, Henning Stahlberg, Andreas Engel.   

Abstract

We present the foundation for establishing a modular, collaborative, integrated, open-source architecture for image processing of electron microscopy images, named iplt. It is designed around object oriented paradigms and implemented using the programming languages C++ and Python. In many aspects it deviates from classical image processing approaches. This paper intends to motivate developers within the community to participate in this on-going project. The iplt homepage can be found at http://www.iplt.org.

Mesh：

Year:  2003        PMID： 14643205     DOI： 10.1016/j.jsb.2003.09.032

Source DB:  PubMed          Journal:  J Struct Biol        ISSN： 1047-8477            Impact factor:   2.867


  9 in total

1.  2dx_merge: data management and merging for 2D crystal images.

Authors:  Bryant Gipson; Xiangyan Zeng; Henning Stahlberg
Journal:  J Struct Biol       Date:  2007-09-25       Impact factor: 2.867

Review 2.  Present and future of membrane protein structure determination by electron crystallography.

Authors:  Iban Ubarretxena-Belandia; David L Stokes
Journal:  Adv Protein Chem Struct Biol       Date:  2010       Impact factor: 3.507

3.  Sparse and incomplete factorial matrices to screen membrane protein 2D crystallization.

Authors:  R Lasala; N Coudray; A Abdine; Z Zhang; M Lopez-Redondo; R Kirshenbaum; J Alexopoulos; Z Zolnai; D L Stokes; I Ubarretxena-Belandia
Journal:  J Struct Biol       Date:  2014-12-03       Impact factor: 2.867

4.  Projection structure of a member of the amino acid/polyamine/organocation transporter superfamily.

Authors:  Fabio Casagrande; Merce Ratera; Andreas D Schenk; Mohamed Chami; Eva Valencia; Jesus Maria Lopez; David Torrents; Andreas Engel; Manuel Palacin; Dimitrios Fotiadis
Journal:  J Biol Chem       Date:  2008-09-25       Impact factor: 5.157

Review 5.  Membrane protein structure determination by electron crystallography.

Authors:  Iban Ubarretxena-Belandia; David L Stokes
Journal:  Curr Opin Struct Biol       Date:  2012-05-08       Impact factor: 6.809

Review 6.  Advances in structural and functional analysis of membrane proteins by electron crystallography.

Authors:  Goragot Wisedchaisri; Steve L Reichow; Tamir Gonen
Journal:  Structure       Date:  2011-10-12       Impact factor: 5.006

Review 7.  Milestones in electron crystallography.

Authors:  Ludovic Renault; Hui-Ting Chou; Po-Lin Chiu; Rena M Hill; Xiangyan Zeng; Bryant Gipson; Zi Yan Zhang; Anchi Cheng; Vinzenz Unger; Henning Stahlberg
Journal:  J Comput Aided Mol Des       Date:  2006-11-11       Impact factor: 3.686

8.  OpenStructure: an integrated software framework for computational structural biology.

Authors:  M Biasini; T Schmidt; S Bienert; V Mariani; G Studer; J Haas; N Johner; A D Schenk; A Philippsen; T Schwede
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2013-04-19

Review 9.  Two-Dimensional Crystallization Procedure, from Protein Expression to Sample Preparation.

Authors:  Qie Kuang; Pasi Purhonen; Hans Hebert
Journal:  Biomed Res Int       Date:  2015-08-27       Impact factor: 3.411
  9 in total

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