Literature DB >> 14640684

Hydrogen bonding alteration of Thr-204 in the complex between pharaonis phoborhodopsin and its transducer protein.

Yuki Sudo1, Yuji Furutani, Kazumi Shimono, Naoki Kamo, Hideki Kandori.   

Abstract

Pharaonis phoborhodopsin (ppR, also called pharaonis sensory rhodopsin II, psRII) is a receptor for negative phototaxis in Natronobacterium pharaonis. It forms a 2:2 complex with its transducer protein, pHtrII, in membranes and transmits light signals through the change in the protein-protein interaction. We previously found that the ppR(K) minus ppR spectrum in D(2)O possesses vibrational bands of ppR at 3479 (-)/3369 (+) cm(-1) only in the presence of pHtrII [Furutani, Y., Sudo, Y., Kamo, N., and Kandori, H. (2003) Biochemistry 42, 4837-4842]. A D/H-unexchangeable X-H group appears to form a stronger hydrogen bond upon retinal photoisomerization in the ppR-pHtrII complex. This article aims to identify the group by use of various mutant proteins. According to the crystal structure, Tyr-199 of ppR forms a hydrogen bond with Asn-74 of pHtrII in the complex. Nevertheless, the 3479 (-)/3369 (+) cm(-1) bands were preserved in the Y199F mutant, excluding the possibility that the bands are O-H stretches of Tyr-199. On the other hand, Thr-204 and Tyr-174 form a hydrogen bond between the retinal chromophore pocket and the binding surface of the ppR-pHtrII complex. These FTIR measurements revealed that the bands at 3479 (-)/3369 (+) cm(-1) disappeared in the T204A mutant, while being shifted to 3498 (-) and 3474 (+) cm(-1) in the T204S mutant. They appear at 3430 (-)/3402 (+) cm(-1) in the Y174F mutant. From these results, we concluded that the bands at 3479 (-)/3369 (+) cm(-1) originate from the O-H stretch of Thr-204. A stronger hydrogen bond as shown by a large spectral downshift (110 cm(-1)) suggests that the specific hydrogen bonding alteration of Thr-204 takes place upon retinal photoisomerization, which does not occur in the absence of the transducer protein. Thr-204 has been known as an important residue for color tuning and photocycle kinetics in ppR. The results presented here point to an additional important role of Thr-204 in ppR for the interaction with pHtrII. Specific interaction in the complex that involves Thr-204 presumably affects the decay kinetics and binding affinity in the M intermediate.

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Year:  2003        PMID: 14640684     DOI: 10.1021/bi035678g

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  15 in total

1.  A microbial rhodopsin with a unique retinal composition shows both sensory rhodopsin II and bacteriorhodopsin-like properties.

Authors:  Yuki Sudo; Kunio Ihara; Shiori Kobayashi; Daisuke Suzuki; Hiroki Irieda; Takashi Kikukawa; Hideki Kandori; Michio Homma
Journal:  J Biol Chem       Date:  2010-12-06       Impact factor: 5.157

2.  Laser-induced transient grating analysis of dynamics of interaction between sensory rhodopsin II D75N and the HtrII transducer.

Authors:  Keiichi Inoue; Jun Sasaki; John L Spudich; Masahide Terazima
Journal:  Biophys J       Date:  2006-12-22       Impact factor: 4.033

3.  Three strategically placed hydrogen-bonding residues convert a proton pump into a sensory receptor.

Authors:  Yuki Sudo; John L Spudich
Journal:  Proc Natl Acad Sci U S A       Date:  2006-10-18       Impact factor: 11.205

4.  A long-lived M-like state of phoborhodopsin that mimics the active state.

Authors:  Yuki Sudo; Tatsuya Nishihori; Masayuki Iwamoto; Kazumi Shimono; Chojiro Kojima; Naoki Kamo
Journal:  Biophys J       Date:  2008-03-28       Impact factor: 4.033

5.  Steric constraint in the primary photoproduct of sensory rhodopsin II is a prerequisite for light-signal transfer to HtrII.

Authors:  Motohiro Ito; Yuki Sudo; Yuji Furutani; Takashi Okitsu; Akimori Wada; Michio Homma; John L Spudich; Hideki Kandori
Journal:  Biochemistry       Date:  2008-05-15       Impact factor: 3.162

6.  Photo-induced regulation of the chromatic adaptive gene expression by Anabaena sensory rhodopsin.

Authors:  Hiroki Irieda; Teppei Morita; Kimika Maki; Michio Homma; Hiroji Aiba; Yuki Sudo
Journal:  J Biol Chem       Date:  2012-08-07       Impact factor: 5.157

Review 7.  Mechanism divergence in microbial rhodopsins.

Authors:  John L Spudich; Oleg A Sineshchekov; Elena G Govorunova
Journal:  Biochim Biophys Acta       Date:  2013-07-03

8.  Salinibacter sensory rhodopsin: sensory rhodopsin I-like protein from a eubacterium.

Authors:  Tomomi Kitajima-Ihara; Yuji Furutani; Daisuke Suzuki; Kunio Ihara; Hideki Kandori; Michio Homma; Yuki Sudo
Journal:  J Biol Chem       Date:  2008-06-19       Impact factor: 5.157

9.  Protein-protein interaction changes in an archaeal light-signal transduction.

Authors:  Hideki Kandori; Yuki Sudo; Yuji Furutani
Journal:  J Biomed Biotechnol       Date:  2010-06-29

10.  Time-resolved detection of sensory rhodopsin II-transducer interaction.

Authors:  Keiichi Inoue; Jun Sasaki; Masayo Morisaki; Fumio Tokunaga; Masahide Terazima
Journal:  Biophys J       Date:  2004-10       Impact factor: 4.033

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