Literature DB >> 22872645

Photo-induced regulation of the chromatic adaptive gene expression by Anabaena sensory rhodopsin.

Hiroki Irieda1, Teppei Morita, Kimika Maki, Michio Homma, Hiroji Aiba, Yuki Sudo.   

Abstract

Rhodopsin molecules are photochemically reactive membrane-embedded proteins, with seven transmembrane α-helices, which bind the chromophore retinal (vitamin A aldehyde). They are roughly divided into two groups according to their basic functions: (i) ion transporters such as proton pumps, chloride pumps, and cation channels; and (ii) photo-sensors such as sensory rhodopsin from microbes and visual pigments from animals. Anabaena sensory rhodopsin (ASR), found in 2003 in the cyanobacterium Anabaena PCC7120, is categorized as a microbial sensory rhodopsin. To investigate the function of ASR in vivo, ASR and the promoter sequence of the pigment protein phycocyanin were co-introduced into Escherichia coli cells with the reporter gene crp. The result clearly showed that ASR functions as a repressor of the CRP protein expression and that this is fully inhibited by the light activation of ASR, suggesting that ASR would directly regulate the transcription of crp. The repression is also clearly inhibited by the truncation of the C-terminal region of ASR, or mutations on the C-terminal Arg residues, indicating the functional importance of the C-terminal region. Thus, our results demonstrate a novel function of rhodopsin molecules and raise the possibility that the membrane-spanning protein ASR could work as a transcriptional factor. In the future, the ASR activity could be utilized as a tool for arbitrary protein expression in vivo regulated by visible light.

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Year:  2012        PMID: 22872645      PMCID: PMC3463315          DOI: 10.1074/jbc.M112.390864

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  40 in total

1.  A microbial rhodopsin with a unique retinal composition shows both sensory rhodopsin II and bacteriorhodopsin-like properties.

Authors:  Yuki Sudo; Kunio Ihara; Shiori Kobayashi; Daisuke Suzuki; Hiroki Irieda; Takashi Kikukawa; Hideki Kandori; Michio Homma
Journal:  J Biol Chem       Date:  2010-12-06       Impact factor: 5.157

2.  Three strategically placed hydrogen-bonding residues convert a proton pump into a sensory receptor.

Authors:  Yuki Sudo; John L Spudich
Journal:  Proc Natl Acad Sci U S A       Date:  2006-10-18       Impact factor: 11.205

3.  Cooperation of group 2 sigma factors, SigD and SigE for light-induced transcription in the cyanobacterium Synechocystis sp. PCC 6803.

Authors:  Tsutomu Yoshimura; Sousuke Imamura; Kan Tanaka; Makoto Shirai; Munehiko Asayama
Journal:  FEBS Lett       Date:  2007-03-13       Impact factor: 4.124

4.  High-speed atomic force microscopy shows dynamic molecular processes in photoactivated bacteriorhodopsin.

Authors:  Mikihiro Shibata; Hayato Yamashita; Takayuki Uchihashi; Hideki Kandori; Toshio Ando
Journal:  Nat Nanotechnol       Date:  2010-02-14       Impact factor: 39.213

Review 5.  Molecular mechanism of photosignaling by archaeal sensory rhodopsins.

Authors:  W D Hoff; K H Jung; J L Spudich
Journal:  Annu Rev Biophys Biomol Struct       Date:  1997

6.  Structure and regulation of genes encoding phycocyanin and allophycocyanin from Anabaena variabilis ATCC 29413.

Authors:  T R Johnson; J I Haynes; J L Wealand; L R Yarbrough; R Hirschberg
Journal:  J Bacteriol       Date:  1988-04       Impact factor: 3.490

7.  Isolation and partial characterization of Het- Fix- mutant strain of the diazotrophic cyanobacterium Anabaena variabilis showing chromatic adaptation.

Authors:  B Singh; V S Chauhan; S Singh; P S Bisen
Journal:  Curr Microbiol       Date:  2001-10       Impact factor: 2.188

8.  Cytoplasmic shuttling of protons in anabaena sensory rhodopsin: implications for signaling mechanism.

Authors:  Lichi Shi; Sa Ryong Yoon; Arandi G Bezerra; Kwang-Hwan Jung; Leonid S Brown
Journal:  J Mol Biol       Date:  2006-03-02       Impact factor: 5.469

9.  Promoter recognition by the RNA polymerase from vegetative cells of the cyanobacterium Anabaena 7120.

Authors:  G J Schneider; J D Lang; R Haselkorn
Journal:  Gene       Date:  1991-08-30       Impact factor: 3.688

Review 10.  Signal transduction during light-quality acclimation in cyanobacteria: a model system for understanding phytochrome-response pathways in prokaryotes.

Authors:  Emily L Stowe-Evans; David M Kehoe
Journal:  Photochem Photobiol Sci       Date:  2004-05-19       Impact factor: 3.982

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  12 in total

Review 1.  Microbial and animal rhodopsins: structures, functions, and molecular mechanisms.

Authors:  Oliver P Ernst; David T Lodowski; Marcus Elstner; Peter Hegemann; Leonid S Brown; Hideki Kandori
Journal:  Chem Rev       Date:  2013-12-23       Impact factor: 60.622

2.  Diversity, Mechanism, and Optogenetic Application of Light-Driven Ion Pump Rhodopsins.

Authors:  Keiichi Inoue
Journal:  Adv Exp Med Biol       Date:  2021       Impact factor: 2.622

3.  Biochemical Analysis of Microbial Rhodopsins.

Authors:  Julia A Maresca; Jessica L Keffer; Kelsey J Miller
Journal:  Curr Protoc Microbiol       Date:  2016-05-06

4.  Structure of an Inward Proton-Transporting Anabaena Sensory Rhodopsin Mutant: Mechanistic Insights.

Authors:  Bamboo Dong; Lissete Sánchez-Magraner; Hartmut Luecke
Journal:  Biophys J       Date:  2016-09-06       Impact factor: 4.033

Review 5.  Conversion of microbial rhodopsins: insights into functionally essential elements and rational protein engineering.

Authors:  Akimasa Kaneko; Keiichi Inoue; Keiichi Kojima; Hideki Kandori; Yuki Sudo
Journal:  Biophys Rev       Date:  2017-11-25

Review 6.  Microbial Rhodopsins: Diversity, Mechanisms, and Optogenetic Applications.

Authors:  Elena G Govorunova; Oleg A Sineshchekov; Hai Li; John L Spudich
Journal:  Annu Rev Biochem       Date:  2017-03-09       Impact factor: 23.643

7.  Using total internal reflection fluorescence microscopy to visualize rhodopsin-containing cells.

Authors:  J L Keffer; C R Sabanayagam; M E Lee; E F DeLong; M W Hahn; J A Maresca
Journal:  Appl Environ Microbiol       Date:  2015-03-13       Impact factor: 4.792

8.  Functional expression of the eukaryotic proton pump rhodopsin OmR2 in Escherichia coli and its photochemical characterization.

Authors:  Masuzu Kikuchi; Keiichi Kojima; Shin Nakao; Susumu Yoshizawa; Shiho Kawanishi; Atsushi Shibukawa; Takashi Kikukawa; Yuki Sudo
Journal:  Sci Rep       Date:  2021-07-20       Impact factor: 4.379

9.  The FurA regulon in Anabaena sp. PCC 7120: in silico prediction and experimental validation of novel target genes.

Authors:  Andrés González; Vladimir Espinosa Angarica; Javier Sancho; María F Fillat
Journal:  Nucleic Acids Res       Date:  2014-02-06       Impact factor: 16.971

Review 10.  Microbial rhodopsins: wide distribution, rich diversity and great potential.

Authors:  Marie Kurihara; Yuki Sudo
Journal:  Biophys Physicobiol       Date:  2015-12-11
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