Literature DB >> 14630667

Libsequence: a C++ class library for evolutionary genetic analysis.

Kevin Thornton1.   

Abstract

UNLABELLED: A C++ class library is available to facilitate the implementation of software for genomics and sequence polymorphism analysis. The library implements methods for data manipulation and the calculation of several statistics commonly used to analyze SNP data. The object-oriented design of the library is intended to be extensible, allowing users to design custom classes for their own needs. In addition, routines are provided to process samples generated by a widely used coalescent simulation. AVAILABILITY: The source code (in C++) is available from http://www.molpopgen.org

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Mesh：

Year:  2003        PMID： 14630667     DOI： 10.1093/bioinformatics/btg316

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  173 in total

1.  Comparative population genomics of maize domestication and improvement.

Authors:  Matthew B Hufford; Xun Xu; Joost van Heerwaarden; Tanja Pyhäjärvi; Jer-Ming Chia; Reed A Cartwright; Robert J Elshire; Jeffrey C Glaubitz; Kate E Guill; Shawn M Kaeppler; Jinsheng Lai; Peter L Morrell; Laura M Shannon; Chi Song; Nathan M Springer; Ruth A Swanson-Wagner; Peter Tiffin; Jun Wang; Gengyun Zhang; John Doebley; Michael D McMullen; Doreen Ware; Edward S Buckler; Shuang Yang; Jeffrey Ross-Ibarra
Journal:  Nat Genet       Date:  2012-06-03       Impact factor: 38.330

2.  Estimating the contribution of mutation, recombination and gene conversion in the generation of haplotypic diversity.

Authors:  Peter L Morrell; Donna M Toleno; Karen E Lundy; Michael T Clegg
Journal:  Genetics       Date:  2006-04-19       Impact factor: 4.562

3.  Genome-wide genetic changes during modern breeding of maize.

Authors:  Yinping Jiao; Hainan Zhao; Longhui Ren; Weibin Song; Biao Zeng; Jinjie Guo; Baobao Wang; Zhipeng Liu; Jing Chen; Wei Li; Mei Zhang; Shaojun Xie; Jinsheng Lai
Journal:  Nat Genet       Date:  2012-06-03       Impact factor: 38.330

4.  Mixed population genomics support for the central marginal hypothesis across the invasive range of the cane toad (Rhinella marina) in Australia.

Authors:  Daryl R Trumbo; Brendan Epstein; Paul A Hohenlohe; Ross A Alford; Lin Schwarzkopf; Andrew Storfer
Journal:  Mol Ecol       Date:  2016-08-08       Impact factor: 6.185

5.  The Genomic Impacts of Drift and Selection for Hybrid Performance in Maize.

Authors:  Justin P Gerke; Jode W Edwards; Katherine E Guill; Jeffrey Ross-Ibarra; Michael D McMullen
Journal:  Genetics       Date:  2015-09-18       Impact factor: 4.562

6.  Evidence of positive selection for a glycogen synthase (GYS1) mutation in domestic horse populations.

Authors:  Annette M McCoy; Robert Schaefer; Jessica L Petersen; Peter L Morrell; Megan A Slamka; James R Mickelson; Stephanie J Valberg; Molly E McCue
Journal:  J Hered       Date:  2013-11-08       Impact factor: 2.645

7.  Clinal variation at phenology-related genes in spruce: parallel evolution in FTL2 and Gigantea?

Authors:  Jun Chen; Yoshiaki Tsuda; Michael Stocks; Thomas Källman; Nannan Xu; Katri Kärkkäinen; Tea Huotari; Vladimir L Semerikov; Giovanni G Vendramin; Martin Lascoux
Journal:  Genetics       Date:  2014-05-09       Impact factor: 4.562

8.  Recombination yet inefficient selection along the Drosophila melanogaster subgroup's fourth chromosome.

Authors:  J Roman Arguello; Yue Zhang; Tomoyuki Kado; Chuanzhu Fan; Ruoping Zhao; Hideki Innan; Wen Wang; Manyuan Long
Journal:  Mol Biol Evol       Date:  2009-12-14       Impact factor: 16.240

9.  Evolutionary and population genomics of the cavity causing bacteria Streptococcus mutans.

Authors:  Omar E Cornejo; Tristan Lefébure; Paulina D Pavinski Bitar; Ping Lang; Vincent P Richards; Kirsten Eilertson; Thuy Do; David Beighton; Lin Zeng; Sang-Joon Ahn; Robert A Burne; Adam Siepel; Carlos D Bustamante; Michael J Stanhope
Journal:  Mol Biol Evol       Date:  2012-12-10       Impact factor: 16.240

10.  Distinct hepatitis B virus dynamics in the immunotolerant and early immunoclearance phases.

Authors:  Hurng-Yi Wang; Ming-Hung Chien; Hsiang-Po Huang; Hsiao-Chi Chang; Chung-Che Wu; Pei-Jer Chen; Mei-Hwei Chang; Ding-Shinn Chen
Journal:  J Virol       Date:  2010-01-20       Impact factor: 5.103
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