Literature DB >> 14629550

Insights into the regulation of transcription by scanning force microscopy.

R T Dame1, C Wyman, N Goosen.   

Abstract

The scanning force microscope (SFM) is a valuable tool for the structural analysis of complexes between protein(s) and DNA. In recent years the application of scanning force microscopy to the field of transcription regulation has been reported in numerous studies. Using this technique, novel insights could be obtained into the architecture and dynamics of complexes, which are relevant to the transcription process and the mechanisms by which this process is regulated. In this article an overview is given of SFM studies addressing, in particular, topics in the field of transcription in prokaryotic organisms.

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Year:  2003        PMID: 14629550     DOI: 10.1111/j.1365-2818.2003.01243.x

Source DB:  PubMed          Journal:  J Microsc        ISSN: 0022-2720            Impact factor:   1.758


  8 in total

1.  Unactivated PKR exists in an open conformation capable of binding nucleotides.

Authors:  Peter A Lemaire; Ingrid Tessmer; Ranyelle Craig; Dorothy A Erie; James L Cole
Journal:  Biochemistry       Date:  2006-08-01       Impact factor: 3.162

Review 2.  Single-molecule studies of RNA polymerase: motoring along.

Authors:  Kristina M Herbert; William J Greenleaf; Steven M Block
Journal:  Annu Rev Biochem       Date:  2008       Impact factor: 23.643

3.  Molecular recognition of DNA-protein complexes: a straightforward method combining scanning force and fluorescence microscopy.

Authors:  Humberto Sanchez; Roland Kanaar; Claire Wyman
Journal:  Ultramicroscopy       Date:  2010-03-24       Impact factor: 2.689

Review 4.  Preparation of DNA and nucleoprotein samples for AFM imaging.

Authors:  Yuri L Lyubchenko
Journal:  Micron       Date:  2010-09-09       Impact factor: 2.251

5.  Dynamic human MutSα-MutLα complexes compact mismatched DNA.

Authors:  Kira C Bradford; Hunter Wilkins; Pengyu Hao; Zimeng M Li; Bangchen Wang; Dan Burke; Dong Wu; Austin E Smith; Logan Spaller; Chunwei Du; Jacob W Gauer; Edward Chan; Peggy Hsieh; Keith R Weninger; Dorothy A Erie
Journal:  Proc Natl Acad Sci U S A       Date:  2020-06-25       Impact factor: 11.205

6.  Single-stranded loops as end-label polarity markers for double-stranded linear DNA templates in atomic force microscopy.

Authors:  Daniel J Billingsley; Neal Crampton; Jennifer Kirkham; Neil H Thomson; William A Bonass
Journal:  Nucleic Acids Res       Date:  2012-03-26       Impact factor: 16.971

7.  Analysis of scanning force microscopy images of protein-induced DNA bending using simulations.

Authors:  Remus T Dame; Joost van Mameren; Martijn S Luijsterburg; Monika E Mysiak; Ana Janićijević; Grzegorz Pazdzior; Peter C van der Vliet; Claire Wyman; Gijs J L Wuite
Journal:  Nucleic Acids Res       Date:  2005-04-20       Impact factor: 16.971

8.  Insights into the architecture and stoichiometry of Escherichia coli PepA*DNA complexes involved in transcriptional control and site-specific DNA recombination by atomic force microscopy.

Authors:  Phu Nguyen Le Minh; Neel Devroede; Jan Massant; Dominique Maes; Daniel Charlier
Journal:  Nucleic Acids Res       Date:  2009-01-09       Impact factor: 16.971

  8 in total

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