Literature DB >> 32586954

Dynamic human MutSα-MutLα complexes compact mismatched DNA.

Kira C Bradford1,2, Hunter Wilkins1, Pengyu Hao3, Zimeng M Li4, Bangchen Wang1, Dan Burke4, Dong Wu1, Austin E Smith1, Logan Spaller1, Chunwei Du5, Jacob W Gauer1, Edward Chan3, Peggy Hsieh5, Keith R Weninger6, Dorothy A Erie7,8.   

Abstract

DNA mismatch repair (MMR) corrects errors that occur during DNA replication. In humans, mutations in the proteins MutSα and MutLα that initiate MMR cause Lynch syndrome, the most common hereditary cancer. MutSα surveilles the DNA, and upon recognition of a replication error it undergoes adenosine triphosphate-dependent conformational changes and recruits MutLα. Subsequently, proliferating cell nuclear antigen (PCNA) activates MutLα to nick the error-containing strand to allow excision and resynthesis. The structure-function properties of these obligate MutSα-MutLα complexes remain mostly unexplored in higher eukaryotes, and models are predominately based on studies of prokaryotic proteins. Here, we utilize atomic force microscopy (AFM) coupled with other methods to reveal time- and concentration-dependent stoichiometries and conformations of assembling human MutSα-MutLα-DNA complexes. We find that they assemble into multimeric complexes comprising three to eight proteins around a mismatch on DNA. On the timescale of a few minutes, these complexes rearrange, folding and compacting the DNA. These observations contrast with dominant models of MMR initiation that envision diffusive MutS-MutL complexes that move away from the mismatch. Our results suggest MutSα localizes MutLα near the mismatch and promotes DNA configurations that could enhance MMR efficiency by facilitating MutLα nicking the DNA at multiple sites around the mismatch. In addition, such complexes may also protect the mismatch region from nucleosome reassembly until repair occurs, and they could potentially remodel adjacent nucleosomes.

Entities:  

Keywords:  AFM; DNA repair; DREEM; MutL; MutS

Mesh:

Substances:

Year:  2020        PMID: 32586954      PMCID: PMC7368325          DOI: 10.1073/pnas.1918519117

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  97 in total

1.  Structure of the MutL C-terminal domain: a model of intact MutL and its roles in mismatch repair.

Authors:  Alba Guarné; Santiago Ramon-Maiques; Erika M Wolff; Rodolfo Ghirlando; Xiaojian Hu; Jeffrey H Miller; Wei Yang
Journal:  EMBO J       Date:  2004-10-07       Impact factor: 11.598

2.  DNA polymerase delta is required for human mismatch repair in vitro.

Authors:  M J Longley; A J Pierce; P Modrich
Journal:  J Biol Chem       Date:  1997-04-18       Impact factor: 5.157

3.  Nucleosome-like, Single-stranded DNA (ssDNA)-Histone Octamer Complexes and the Implication for DNA Double Strand Break Repair.

Authors:  Nicholas L Adkins; Sarah G Swygert; Parminder Kaur; Hengyao Niu; Sergei A Grigoryev; Patrick Sung; Hong Wang; Craig L Peterson
Journal:  J Biol Chem       Date:  2017-02-15       Impact factor: 5.157

4.  Dynamic control of strand excision during human DNA mismatch repair.

Authors:  Yongmoon Jeon; Daehyung Kim; Juana V Martín-López; Ryanggeun Lee; Jungsic Oh; Jeungphill Hanne; Richard Fishel; Jong-Bong Lee
Journal:  Proc Natl Acad Sci U S A       Date:  2016-03-07       Impact factor: 11.205

5.  Structure and function of the N-terminal 40 kDa fragment of human PMS2: a monomeric GHL ATPase.

Authors:  A Guarné; M S Junop; W Yang
Journal:  EMBO J       Date:  2001-10-01       Impact factor: 11.598

6.  Differential specificities and simultaneous occupancy of human MutSalpha nucleotide binding sites.

Authors:  Diana Martik; Celia Baitinger; Paul Modrich
Journal:  J Biol Chem       Date:  2004-04-22       Impact factor: 5.157

7.  DNA Mismatch Repair Interacts with CAF-1- and ASF1A-H3-H4-dependent Histone (H3-H4)2 Tetramer Deposition.

Authors:  Elena Rodriges Blanko; Lyudmila Y Kadyrova; Farid A Kadyrov
Journal:  J Biol Chem       Date:  2016-03-04       Impact factor: 5.157

8.  Stoichiometry of MutS and MutL at unrepaired mismatches in vivo suggests a mechanism of repair.

Authors:  Marina Elez; Miroslav Radman; Ivan Matic
Journal:  Nucleic Acids Res       Date:  2012-01-12       Impact factor: 16.971

9.  MutS switches between two fundamentally distinct clamps during mismatch repair.

Authors:  Cherlhyun Jeong; Won-Ki Cho; Kyung-Mi Song; Christopher Cook; Tae-Young Yoon; Changill Ban; Richard Fishel; Jong-Bong Lee
Journal:  Nat Struct Mol Biol       Date:  2011-01-30       Impact factor: 15.369

10.  Coordinated protein and DNA conformational changes govern mismatch repair initiation by MutS.

Authors:  Sharonda J LeBlanc; Jacob W Gauer; Pengyu Hao; Brandon C Case; Manju M Hingorani; Keith R Weninger; Dorothy A Erie
Journal:  Nucleic Acids Res       Date:  2018-11-16       Impact factor: 16.971

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  9 in total

1.  Recurrent mismatch binding by MutS mobile clamps on DNA localizes repair complexes nearby.

Authors:  Pengyu Hao; Sharonda J LeBlanc; Brandon C Case; Timothy C Elston; Manju M Hingorani; Dorothy A Erie; Keith R Weninger
Journal:  Proc Natl Acad Sci U S A       Date:  2020-07-15       Impact factor: 11.205

2.  MutS sliding clamps on an uncertain track to DNA mismatch repair.

Authors:  Christopher D Putnam
Journal:  Proc Natl Acad Sci U S A       Date:  2020-08-04       Impact factor: 11.205

3.  Molecular basis of the dual role of the Mlh1-Mlh3 endonuclease in MMR and in meiotic crossover formation.

Authors:  Jingqi Dai; Aurore Sanchez; Céline Adam; Lepakshi Ranjha; Giordano Reginato; Pierre Chervy; Carine Tellier-Lebegue; Jessica Andreani; Raphaël Guérois; Virginie Ropars; Marie-Hélène Le Du; Laurent Maloisel; Emmanuelle Martini; Pierre Legrand; Aurélien Thureau; Petr Cejka; Valérie Borde; Jean-Baptiste Charbonnier
Journal:  Proc Natl Acad Sci U S A       Date:  2021-06-08       Impact factor: 11.205

Review 4.  The Dark Side of UV-Induced DNA Lesion Repair.

Authors:  Wojciech Strzałka; Piotr Zgłobicki; Ewa Kowalska; Aneta Bażant; Dariusz Dziga; Agnieszka Katarzyna Banaś
Journal:  Genes (Basel)       Date:  2020-12-02       Impact factor: 4.096

Review 5.  Modifiers of Somatic Repeat Instability in Mouse Models of Friedreich Ataxia and the Fragile X-Related Disorders: Implications for the Mechanism of Somatic Expansion in Huntington's Disease.

Authors:  Xiaonan Zhao; Daman Kumari; Carson J Miller; Geum-Yi Kim; Bruce Hayward; Antonia G Vitalo; Ricardo Mouro Pinto; Karen Usdin
Journal:  J Huntingtons Dis       Date:  2021

6.  Mispair-bound human MutS-MutL complex triggers DNA incisions and activates mismatch repair.

Authors:  Janice Ortega; Grace Sanghee Lee; Liya Gu; Wei Yang; Guo-Min Li
Journal:  Cell Res       Date:  2021-01-28       Impact factor: 46.297

7.  MutS functions as a clamp loader by positioning MutL on the DNA during mismatch repair.

Authors:  Xiao-Wen Yang; Xiao-Peng Han; Chong Han; James London; Richard Fishel; Jiaquan Liu
Journal:  Nat Commun       Date:  2022-10-03       Impact factor: 17.694

Review 8.  DNA damage repair: historical perspectives, mechanistic pathways and clinical translation for targeted cancer therapy.

Authors:  Ruixue Huang; Ping-Kun Zhou
Journal:  Signal Transduct Target Ther       Date:  2021-07-09

9.  Linker domain function predicts pathogenic MLH1 missense variants.

Authors:  James London; Juana Martín-López; Inho Yang; Jiaquan Liu; Jong-Bong Lee; Richard Fishel
Journal:  Proc Natl Acad Sci U S A       Date:  2021-03-02       Impact factor: 11.205

  9 in total

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