Literature DB >> 20382478

Molecular recognition of DNA-protein complexes: a straightforward method combining scanning force and fluorescence microscopy.

Humberto Sanchez1, Roland Kanaar, Claire Wyman.   

Abstract

Combining scanning force and fluorescent microscopy allows simultaneous identification of labeled biomolecules and analysis of their nanometer level architectural arrangement. Fluorescent polystyrene nano-spheres were used as reliable objects for alignment of optical and topographic images. This allowed the precise localization of different fluorescence particles within complex molecular assemblies whose structure was mapped in nanometer detail topography. Our experiments reveal the versatility of this method for analysis of proteins and protein-DNA complexes. Copyright 2010 Elsevier B.V. All rights reserved.

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Year:  2010        PMID： 20382478      PMCID： PMC3822906          DOI： 10.1016/j.ultramic.2010.03.002

Source DB:  PubMed          Journal:  Ultramicroscopy        ISSN： 0304-3991            Impact factor:   2.689


  27 in total

1.  Polymerase activities and RNA structures in the atomic force microscope.

Authors:  H G Hansma; R Golan; W Hsieh; S L Daubendiek; E T Kool
Journal:  J Struct Biol       Date:  1999-10       Impact factor: 2.867

2.  Fluorescence microscopy with diffraction resolution barrier broken by stimulated emission.

Authors:  T A Klar; S Jakobs; M Dyba; A Egner; S W Hell
Journal:  Proc Natl Acad Sci U S A       Date:  2000-07-18       Impact factor: 11.205

3.  A combined optical and atomic force microscope for live cell investigations.

Authors:  Josef Madl; Sebastian Rhode; Herbert Stangl; Hannes Stockinger; Peter Hinterdorfer; Gerhard J Schütz; Gerald Kada
Journal:  Ultramicroscopy       Date:  2006-04-21       Impact factor: 2.689

4.  Sub-diffraction-limit imaging by stochastic optical reconstruction microscopy (STORM).

Authors:  Michael J Rust; Mark Bates; Xiaowei Zhuang
Journal:  Nat Methods       Date:  2006-08-09       Impact factor: 28.547

5.  Imaging intracellular fluorescent proteins at nanometer resolution.

Authors:  Eric Betzig; George H Patterson; Rachid Sougrat; O Wolf Lindwasser; Scott Olenych; Juan S Bonifacino; Michael W Davidson; Jennifer Lippincott-Schwartz; Harald F Hess
Journal:  Science       Date:  2006-08-10       Impact factor: 47.728

6.  Non-blinking semiconductor colloidal quantum dots for biology, optoelectronics and quantum optics.

Authors:  Piernicola Spinicelli; Benoit Mahler; Stéphanie Buil; Xavier Quélin; Benoit Dubertret; Jean-Pierre Hermier
Journal:  Chemphyschem       Date:  2009-04-14       Impact factor: 3.102

7.  Direct imaging of human Rad51 nucleoprotein dynamics on individual DNA molecules.

Authors:  Jovencio Hilario; Ichiro Amitani; Ronald J Baskin; Stephen C Kowalczykowski
Journal:  Proc Natl Acad Sci U S A       Date:  2009-01-02       Impact factor: 11.205

8.  Combining atomic force and fluorescence microscopy for analysis of quantum-dot labeled protein-DNA complexes.

Authors:  Yuval Ebenstein; Natalie Gassman; Soohong Kim; Shimon Weiss
Journal:  J Mol Recognit       Date:  2009 Sep-Oct       Impact factor: 2.137

9.  RAD50 and NBS1 form a stable complex functional in DNA binding and tethering.

Authors:  Eddy van der Linden; Humberto Sanchez; Eri Kinoshita; Roland Kanaar; Claire Wyman
Journal:  Nucleic Acids Res       Date:  2009-01-16       Impact factor: 16.971

10.  Counting RAD51 proteins disassembling from nucleoprotein filaments under tension.

Authors:  Joost van Mameren; Mauro Modesti; Roland Kanaar; Claire Wyman; Erwin J G Peterman; Gijs J L Wuite
Journal:  Nature       Date:  2008-12-07       Impact factor: 49.962
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  8 in total

1.  Combined optical and topographic imaging reveals different arrangements of human RAD54 with presynaptic and postsynaptic RAD51-DNA filaments.

Authors:  Humberto Sanchez; Aryandi Kertokalio; Sari van Rossum-Fikkert; Roland Kanaar; Claire Wyman
Journal:  Proc Natl Acad Sci U S A       Date:  2013-06-25       Impact factor: 11.205

2.  Architectural plasticity of human BRCA2-RAD51 complexes in DNA break repair.

Authors:  Humberto Sánchez; Maarten W Paul; Malgorzata Grosbart; Sarah E van Rossum-Fikkert; Joyce H G Lebbink; Roland Kanaar; Adriaan B Houtsmuller; Claire Wyman
Journal:  Nucleic Acids Res       Date:  2017-05-05       Impact factor: 16.971

3.  High accuracy FIONA-AFM hybrid imaging.

Authors:  D N Fronczek; C Quammen; H Wang; C Kisker; R Superfine; R Taylor; D A Erie; I Tessmer
Journal:  Ultramicroscopy       Date:  2011-01-19       Impact factor: 2.689

Review 4.  Studying protein-DNA interactions using atomic force microscopy.

Authors:  Emily C Beckwitt; Muwen Kong; Bennett Van Houten
Journal:  Semin Cell Dev Biol       Date:  2017-06-30       Impact factor: 7.727

5.  Using Atomic Force Microscopy to Characterize the Conformational Properties of Proteins and Protein-DNA Complexes That Carry Out DNA Repair.

Authors:  Sharonda LeBlanc; Hunter Wilkins; Zimeng Li; Parminder Kaur; Hong Wang; Dorothy A Erie
Journal:  Methods Enzymol       Date:  2017-06-16       Impact factor: 1.600

6.  Effect of the BRCA2 CTRD domain on RAD51 filaments analyzed by an ensemble of single molecule techniques.

Authors:  J T Holthausen; M T J van Loenhout; H Sanchez; D Ristic; S E van Rossum-Fikkert; M Modesti; C Dekker; R Kanaar; C Wyman
Journal:  Nucleic Acids Res       Date:  2011-05-16       Impact factor: 16.971

Review 7.  Investigating bioconjugation by atomic force microscopy.

Authors:  Ingrid Tessmer; Parminder Kaur; Jiangguo Lin; Hong Wang
Journal:  J Nanobiotechnology       Date:  2013-07-15       Impact factor: 10.435

8.  Symmetric curvature descriptors for label-free analysis of DNA.

Authors:  Renato Buzio; Luca Repetto; Francesca Giacopelli; Roberto Ravazzolo; Ugo Valbusa
Journal:  Sci Rep       Date:  2014-09-24       Impact factor: 4.379
  8 in total

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