Literature DB >> 14629113

Comparative map between chicken chromosome 15 and human chromosomal region 12q24 and 22q11-q12.

Danyel G J Jennen1, Richard P M A Crooijmans, Bram Kamps, Rukiye Açar, Jan J van der Poel, Martien A M Groenen.   

Abstract

The physical and comparative map of GGA15 was improved by the construction of 9 BAC contigs around loci previously mapped on GGA15 by linkage analysis. In total, 240 BAC clones were isolated, covering 30-35% of GGA15, and 120 STS were developed (104 STS derived from BAC end sequences and 18 STS derived within genes). Seventeen chicken orthologues of human genes located on human Chr 22q11-q12 were directly mapped within BAC contigs of GGA15. Furthermore, the partial sequences of the chicken BAC clones were compared with sequences present in the EMBL/GenBank databases and revealed matches to 26 genes, ESTs, and genomic clones located on HSA22q11-q12 and HSA12q24. These results provide a better alignment of GGA15 with the corresponding regions in human and mouse, and improve our knowledge of the evolution and dynamics of the vertebrate genome.

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Year:  2003        PMID： 14629113     DOI： 10.1007/s00335-003-3007-z

Source DB:  PubMed          Journal:  Mamm Genome        ISSN： 0938-8990            Impact factor:   2.957


  20 in total

1.  The dynamics of chromosome evolution in birds and mammals.

Authors:  D W Burt; C Bruley; I C Dunn; C T Jones; A Ramage; A S Law; D R Morrice; I R Paton; J Smith; D Windsor; A Sazanov; R Fries; D Waddington
Journal:  Nature       Date:  1999-11-25       Impact factor: 49.962

2.  Phylogenomics. Ancestral primate viewed.

Authors:  S J O'Brien; R Stanyon
Journal:  Nature       Date:  1999-11-25       Impact factor: 49.962

3.  Two-dimensional screening of the Wageningen chicken BAC library.

Authors:  R P Crooijmans; J Vrebalov; R J Dijkhof; J J van der Poel; M A Groenen
Journal:  Mamm Genome       Date:  2000-05       Impact factor: 2.957

4.  A consensus linkage map of the chicken genome.

Authors:  M A Groenen; H H Cheng; N Bumstead; B F Benkel; W E Briles; T Burke; D W Burt; L B Crittenden; J Dodgson; J Hillel; S Lamont; A P de Leon; M Soller; H Takahashi; A Vignal
Journal:  Genome Res       Date:  2000-01       Impact factor: 9.043

5.  GRIMM: genome rearrangements web server.

Authors:  Glenn Tesler
Journal:  Bioinformatics       Date:  2002-03       Impact factor: 6.937

6.  A comparative map of chicken chromosome 24 and human chromosome 11.

Authors:  D G J Jennen; R P M A Crooijmans; B Kamps; R Açar; A Veenendaal; J J van der Poel; M A M Groenen
Journal:  Anim Genet       Date:  2002-06       Impact factor: 3.169

7.  A comprehensive microsatellite linkage map of the chicken genome.

Authors:  M A Groenen; R P Crooijmans; A Veenendaal; H H Cheng; M Siwek; J J van der Poel
Journal:  Genomics       Date:  1998-04-15       Impact factor: 5.736

8.  Conserved synteny between the chicken Z sex chromosome and human chromosome 9 includes the male regulatory gene DMRT1: a comparative (re)view on avian sex determination.

Authors:  I Nanda; E Zend-Ajusch; Z Shan; F Grützner; M Schartl; D W Burt; M Koehler; V M Fowler; G Goodwin; W J Schneider; S Mizuno; G Dechant; T Haaf; M Schmid
Journal:  Cytogenet Cell Genet       Date:  2000

9.  The chicken beta A4- and beta B1-crystallin-encoding genes are tightly linked.

Authors:  M K Duncan; J I Haynes; J Piatigorsky
Journal:  Gene       Date:  1995-09-11       Impact factor: 3.688

10.  The beta crystallin genes on human chromosome 22 define a new region of homology with mouse chromosome 5.

Authors:  T J Hulsebos; N A Jenkins; D J Gilbert; N G Copeland
Journal:  Genomics       Date:  1995-01-20       Impact factor: 5.736
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  6 in total

1.  A radiation hybrid map of chicken Chromosome 4.

Authors:  Tarik S K M Rabie; Richard P M A Crooijmans; Mireille Morisson; Joanna Andryszkiewicz; Jan J van der Poel; Alain Vignal; Martien A M Groenen
Journal:  Mamm Genome       Date:  2004-07       Impact factor: 2.957

2.  Interspecific chromosome-wide transcription profiles reveal the existence of mammalian-specific and species-specific chromosome domains.

Authors:  Gian Mario Cosseddu; Miguel Perez-Enciso; Marc Fellous; Daniel Vaiman
Journal:  J Mol Evol       Date:  2004-09       Impact factor: 2.395

3.  Construction of a radiation hybrid map of chicken chromosome 2 and alignment to the chicken draft sequence.

Authors:  Sophie Leroux; Mélanie Dottax; Suzanne Bardes; Florence Vignoles; Katia Fève; Frédérique Pitel; Mireille Morisson; Alain Vignal
Journal:  BMC Genomics       Date:  2005-02-04       Impact factor: 3.969

4.  Addition of the microchromosome GGA25 to the chicken genome sequence assembly through radiation hybrid and genetic mapping.

Authors:  Marine Douaud; Katia Fève; Marie Gerus; Valérie Fillon; Suzanne Bardes; David Gourichon; Deborah A Dawson; Olivier Hanotte; Terry Burke; Florence Vignoles; Mireille Morisson; Michèle Tixier-Boichard; Alain Vignal; Frédérique Pitel
Journal:  BMC Genomics       Date:  2008-03-17       Impact factor: 3.969

5.  A high-resolution radiation hybrid map of chicken chromosome 5 and comparison with human chromosomes.

Authors:  Frédérique Pitel; Behnam Abasht; Mireille Morisson; Richard P M A Crooijmans; Florence Vignoles; Sophie Leroux; Katia Feve; Suzanne Bardes; Denis Milan; Sandrine Lagarrigue; Martien A M Groenen; Madeleine Douaire; Alain Vignal
Journal:  BMC Genomics       Date:  2004-09-15       Impact factor: 3.969

6.  Mapping and genotypic analysis of the NK-lysin gene in chicken.

Authors:  Mi Ok Lee; Ence Yang; Mireille Morisson; Alain Vignal; Yong-Zhen Huang; Hans H Cheng; William M Muir; Susan J Lamont; Hyun Soon Lillehoj; Sung Hyen Lee; James E Womack
Journal:  Genet Sel Evol       Date:  2014-07-07       Impact factor: 4.297
  6 in total

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