Literature DB >> 11934753

GRIMM: genome rearrangements web server.

Glenn Tesler1.   

Abstract

SUMMARY: Genome Rearrangements In Man and Mouse (GRIMM) is a tool for analyzing rearrangements of gene orders in pairs of unichromosomal and multichromosomal genomes, with either signed or unsigned gene data. Although there are several programs for analyzing rearrangements in unichromosomal genomes, this is the first to analyze rearrangements in multichromosomal genomes. GRIMM also provides a new algorithm for analyzing comparative maps for which gene directions are unknown. AVAILABILITY: A web server, with instructions and sample data, is available at http://www-cse.ucsd.edu/groups/bioinformatics/GRIMM.

Entities:  

Mesh：

Year:  2002        PMID： 11934753     DOI： 10.1093/bioinformatics/18.3.492

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  135 in total

1.  Comparative map between chicken chromosome 15 and human chromosomal region 12q24 and 22q11-q12.

Authors:  Danyel G J Jennen; Richard P M A Crooijmans; Bram Kamps; Rukiye Açar; Jan J van der Poel; Martien A M Groenen
Journal:  Mamm Genome       Date:  2003-09       Impact factor: 2.957

2.  Chromosome rearrangements in evolution: From gene order to genome sequence and back.

Authors:  David Sankoff; Joseph H Nadeau
Journal:  Proc Natl Acad Sci U S A       Date:  2003-09-23       Impact factor: 11.205

3.  Evolution's cauldron: duplication, deletion, and rearrangement in the mouse and human genomes.

Authors:  W James Kent; Robert Baertsch; Angie Hinrichs; Webb Miller; David Haussler
Journal:  Proc Natl Acad Sci U S A       Date:  2003-09-19       Impact factor: 11.205

4.  Fragile regions and not functional constraints predominate in shaping gene organization in the genus Drosophila.

Authors:  Marcin von Grotthuss; Michael Ashburner; José M Ranz
Journal:  Genome Res       Date:  2010-07-02       Impact factor: 9.043

5.  Distinctive architecture of the chloroplast genome in the chlorophycean green alga Stigeoclonium helveticum.

Authors:  Anne-Sophie Bélanger; Jean-Simon Brouard; Patrick Charlebois; Christian Otis; Claude Lemieux; Monique Turmel
Journal:  Mol Genet Genomics       Date:  2006-08-31       Impact factor: 3.291

6.  Chloroplast genomes of the diatoms Phaeodactylum tricornutum and Thalassiosira pseudonana: comparison with other plastid genomes of the red lineage.

Authors:  Marie-Pierre Oudot-Le Secq; Jane Grimwood; Harris Shapiro; E Virginia Armbrust; Chris Bowler; Beverley R Green
Journal:  Mol Genet Genomics       Date:  2007-01-25       Impact factor: 3.291

7.  Evolution of a distinct genomic domain in Drosophila: comparative analysis of the dot chromosome in Drosophila melanogaster and Drosophila virilis.

Authors:  Wilson Leung; Christopher D Shaffer; Taylor Cordonnier; Jeannette Wong; Michelle S Itano; Elizabeth E Slawson Tempel; Elmer Kellmann; David Michael Desruisseau; Carolyn Cain; Robert Carrasquillo; Tien M Chusak; Katazyna Falkowska; Kelli D Grim; Rui Guan; Jacquelyn Honeybourne; Sana Khan; Louis Lo; Rebecca McGaha; Jevon Plunkett; Justin M Richner; Ryan Richt; Leah Sabin; Anita Shah; Anushree Sharma; Sonal Singhal; Fine Song; Christopher Swope; Craig B Wilen; Jeremy Buhler; Elaine R Mardis; Sarah C R Elgin
Journal:  Genetics       Date:  2010-05-17       Impact factor: 4.562

8.  Divergent patterns of breakpoint reuse in Muroid rodents.

Authors:  E E Mlynarski; C J Obergfell; M J O'Neill; R J O'Neill
Journal:  Mamm Genome       Date:  2009-12-22       Impact factor: 2.957

9.  DiagHunter and GenoPix2D: programs for genomic comparisons, large-scale homology discovery and visualization.

Authors:  Steven B Cannon; Alexander Kozik; Brian Chan; Richard Michelmore; Nevin D Young
Journal:  Genome Biol       Date:  2003-09-19       Impact factor: 13.583

10.  Breakpoint graphs and ancestral genome reconstructions.

Authors:  Max A Alekseyev; Pavel A Pevzner
Journal:  Genome Res       Date:  2009-02-13       Impact factor: 9.043
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