Literature DB >> 14627727

Sequence dependence of beta-hairpin structure: comparison of a salt bridge and an aromatic interaction.

Sarah E Kiehna1, Marcey L Waters.   

Abstract

A comparison of the contributions and position dependence of cross-strand electrostatic and aromatic side-chain interactions to beta-sheet stability has been performed by using nuclear magnetic resonance in a well-folded beta-hairpin peptide of the general sequence XRTVXVdPGOXITQX. Phe-Phe and Glu-Lys pairs were varied at the internal and terminal non-hydrogen-bonded position, and the resulting stability was measured by the effects on alpha-hydrogen and aromatic hydrogen chemical shifts. It was determined that the introduction of a Phe-Phe pair resulted in a more folded peptide, regardless of position, and a more tightly folded core. Substitution of the Glu-Lys pair at the internal position results in a less folded peptide and increased fraying at the terminal residues. Upfield shifting of the aromatic hydrogens provided evidence for an edge-face aromatic interaction, regardless of position of the Phe-Phe pair. In peptides with two Phe-Phe pairs, substitution with Glu-Lys at either position resulted in a weakening of the aromatic interaction and a subsequent decrease in peptide stability. Thermal denaturation of the peptides containing Phe-Phe indicates that the aromatic interaction is enthalpically favored, whereas the folding of hairpins with cross-strand Glu-Lys pairs was less enthalpically favorable but entropically more favorable.

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Year:  2003        PMID: 14627727      PMCID: PMC2366975          DOI: 10.1110/ps.03215403

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  27 in total

1.  Dissecting the stability of a beta-hairpin peptide that folds in water: NMR and molecular dynamics analysis of the beta-turn and beta-strand contributions to folding.

Authors:  S R Griffiths-Jones; A J Maynard; M S Searle
Journal:  J Mol Biol       Date:  1999-10-08       Impact factor: 5.469

2.  Molecular carpentry: piecing together helices and hairpins in designed peptides.

Authors:  C Das; S C Shankaramma; P Balaram
Journal:  Chemistry       Date:  2001       Impact factor: 5.236

3.  A Designed beta-Hairpin Containing a Natural Hydrophobic Cluster This research was supported by the National Science Foundation (CHE-9820952). J.F.E. was supported by a fellowship from the Ministerio de Educacion y Cultura (Spain) and the Fulbright Commission. The mass spectrometer was purchased in part with a National Science Foundation grant (CHE-9520868), and the NMR spectrometers were purchased in part with a National Institute Of Health grant (1 S10 RR04981). The CD spectrometer and analytical ultracentrifuge are part of the UW Biophysics Instrumentation Facility (NSF BIR-9512577).

Authors: 
Journal:  Angew Chem Int Ed Engl       Date:  2000-07-03       Impact factor: 15.336

4.  Thermodynamic analysis of beta-hairpin-forming peptides from the thermal dependence of (1)H NMR chemical shifts.

Authors:  Clara M Santiveri; Jorge Santoro; Manuel Rico; M Angeles Jiménez
Journal:  J Am Chem Soc       Date:  2002-12-18       Impact factor: 15.419

5.  The dependence of amino acid pair correlations on structural environment.

Authors:  A P Cootes; P M Curmi; R Cunningham; C Donnelly; A E Torda
Journal:  Proteins       Date:  1998-08-01

6.  De novo design and structural analysis of a model beta-hairpin peptide system.

Authors:  M Ramírez-Alvarado; F J Blanco; L Serrano
Journal:  Nat Struct Biol       Date:  1996-07

7.  Energetics of polar side-chain interactions in helical peptides: salt effects on ion pairs and hydrogen bonds.

Authors:  J S Smith; J M Scholtz
Journal:  Biochemistry       Date:  1998-01-06       Impact factor: 3.162

8.  Electrostatic interactions across a beta-sheet.

Authors:  C A Blasie; J M Berg
Journal:  Biochemistry       Date:  1997-05-20       Impact factor: 3.162

9.  Interstrand side chain--side chain interactions in a designed beta-hairpin: significance of both lateral and diagonal pairings.

Authors:  F A Syud; H E Stanger; S H Gellman
Journal:  J Am Chem Soc       Date:  2001-09-12       Impact factor: 15.419

10.  Stabilization of beta-hairpin peptides by salt bridges: role of preorganization in the energetic contribution of weak interactions.

Authors:  Barbara Ciani; Muriel Jourdan; Mark S Searle
Journal:  J Am Chem Soc       Date:  2003-07-30       Impact factor: 15.419

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  16 in total

1.  The geometry and efficacy of cation-pi interactions in a diagonal position of a designed beta-hairpin.

Authors:  Chad D Tatko; Marcey L Waters
Journal:  Protein Sci       Date:  2003-11       Impact factor: 6.725

2.  Stabilizing capping motif for beta-hairpins and sheets.

Authors:  Brandon L Kier; Irene Shu; Lisa A Eidenschink; Niels H Andersen
Journal:  Proc Natl Acad Sci U S A       Date:  2010-05-19       Impact factor: 11.205

3.  Boosting protein stability with the computational design of β-sheet surfaces.

Authors:  Doo Nam Kim; Timothy M Jacobs; Brian Kuhlman
Journal:  Protein Sci       Date:  2016-01-13       Impact factor: 6.725

4.  Chemical shifts provide fold populations and register of beta hairpins and beta sheets.

Authors:  R Matthew Fesinmeyer; F Michael Hudson; Katherine A Olsen; George W N White; Anna Euser; Niels H Andersen
Journal:  J Biomol NMR       Date:  2005-12       Impact factor: 2.835

Review 5.  Roles of beta-turns in protein folding: from peptide models to protein engineering.

Authors:  Anna Marie C Marcelino; Lila M Gierasch
Journal:  Biopolymers       Date:  2008-05       Impact factor: 2.505

6.  Exploring beta-sheet structure and interactions with chemical model systems.

Authors:  James S Nowick
Journal:  Acc Chem Res       Date:  2008-09-18       Impact factor: 22.384

7.  Control of proton and electron transfer in de novo designed, biomimetic β hairpins.

Authors:  Robin S Sibert; Mira Josowicz; Bridgette A Barry
Journal:  ACS Chem Biol       Date:  2010-10-04       Impact factor: 5.100

8.  Minimization and optimization of designed beta-hairpin folds.

Authors:  Niels H Andersen; Katherine A Olsen; R Matthew Fesinmeyer; Xu Tan; F Michael Hudson; Lisa A Eidenschink; Shabnam R Farazi
Journal:  J Am Chem Soc       Date:  2006-05-10       Impact factor: 15.419

9.  Mutational effects on the folding dynamics of a minimized hairpin.

Authors:  Michele Scian; Irene Shu; Katherine A Olsen; Khalil Hassam; Niels H Andersen
Journal:  Biochemistry       Date:  2013-04-05       Impact factor: 3.162

10.  Terminal sidechain packing of a designed beta-hairpin influences conformation and stability.

Authors:  Lisa Eidenschink; Edward Crabbe; Niels H Andersen
Journal:  Biopolymers       Date:  2009-07       Impact factor: 2.505

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