Literature DB >> 12475331

Thermodynamic analysis of beta-hairpin-forming peptides from the thermal dependence of (1)H NMR chemical shifts.

Clara M Santiveri1, Jorge Santoro, Manuel Rico, M Angeles Jiménez.   

Abstract

The temperature dependence of the (1)H chemical shifts of six designed peptides previously shown to adopt beta-hairpin structures in aqueous solution has been analyzed in terms of two-state (beta-hairpin left arrow over right arrow coil) equilibrium. The stability of the beta-hairpins formed by these peptides, as derived from their T(m) (midpoint transition temperature) values, parallels in general their ability to adopt those structures as deduced from independent NMR parameters: NOEs, Deltadelta(C)(alpha)(H), Deltadelta(C)(alpha), and Deltadelta(C)(beta) values. The observed T(m) values are dependent on the particular position within the beta-hairpin that is probed, indicating that their folding to a beta-hairpin conformation deviates from a "true" two-state transition. To obtain individual T(m) values for each hairpin region in each peptide, a simplified model of a successive uncoupled two-state equilibrium covering the entire process has been applied. The distribution of T(m) values obtained for the different beta-hairpin regions (turn, strands, backbone, side chains) in the six analyzed peptides reveals a similar pattern. A model for beta-hairpin folding is proposed on the basis of this pattern and the reasonable assumption that regions showing higher T(m) values are the last ones to unfold and, presumably, the first to form. With this assumption, the analysis suggests that turn formation is the first event in beta-hairpin folding. This is consistent with previous results on the essential role of the turn sequence in beta-hairpin folding.

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Year:  2002        PMID: 12475331     DOI: 10.1021/ja0278537

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  8 in total

1.  Chemical shifts provide fold populations and register of beta hairpins and beta sheets.

Authors:  R Matthew Fesinmeyer; F Michael Hudson; Katherine A Olsen; George W N White; Anna Euser; Niels H Andersen
Journal:  J Biomol NMR       Date:  2005-12       Impact factor: 2.835

2.  Kinetics and thermodynamics of type VIII beta-turn formation: a CD, NMR, and microsecond explicit molecular dynamics study of the GDNP tetrapeptide.

Authors:  Patrick F J Fuchs; Alexandre M J J Bonvin; Brigida Bochicchio; Antonietta Pepe; Alain J P Alix; Antonio M Tamburro
Journal:  Biophys J       Date:  2006-01-27       Impact factor: 4.033

3.  Infrared study of the stability and folding kinetics of a series of β-hairpin peptides with a common NPDG turn.

Authors:  Yao Xu; Deguo Du; Rolando Oyola
Journal:  J Phys Chem B       Date:  2011-12-02       Impact factor: 2.991

4.  Micelle-Triggered β-Hairpin to α-Helix Transition in a 14-Residue Peptide from a Choline-Binding Repeat of the Pneumococcal Autolysin LytA.

Authors:  Héctor Zamora-Carreras; Beatriz Maestro; Erik Strandberg; Anne S Ulrich; Jesús M Sanz; M Ángeles Jiménez
Journal:  Chemistry       Date:  2015-04-27       Impact factor: 5.236

5.  Probing the lower size limit for protein-like fold stability: ten-residue microproteins with specific, rigid structures in water.

Authors:  Brandon L Kier; Niels H Andersen
Journal:  J Am Chem Soc       Date:  2008-10-09       Impact factor: 15.419

6.  Very short peptides with stable folds: building on the interrelationship of Trp/Trp, Trp/cation, and Trp/backbone-amide interaction geometries.

Authors:  Lisa Eidenschink; Brandon L Kier; Kelly N L Huggins; Niels H Andersen
Journal:  Proteins       Date:  2009-05-01

7.  Sequence dependence of beta-hairpin structure: comparison of a salt bridge and an aromatic interaction.

Authors:  Sarah E Kiehna; Marcey L Waters
Journal:  Protein Sci       Date:  2003-12       Impact factor: 6.725

8.  Factors involved in the stability of isolated beta-sheets: Turn sequence, beta-sheet twisting, and hydrophobic surface burial.

Authors:  Clara M Santiveri; Jorge Santoro; Manuel Rico; M Angeles Jiménez
Journal:  Protein Sci       Date:  2004-04       Impact factor: 6.725

  8 in total

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