Literature DB >> 14624003

The ability to form full-length intron RNA circles is a general property of nuclear group I introns.

Henrik Nielsen1, Tonje Fiskaa, Asa Birna Birgisdottir, Peik Haugen, Christer Einvik, Steinar Johansen.   

Abstract

In addition to splicing, group I intron RNA is capable of an alternative two-step processing pathway that results in the formation of full-length intron circular RNA. The circularization pathway is initiated by hydrolytic cleavage at the 3' splice site and followed by a transesterification reaction in which the intron terminal guanosine attacks the 5' splice site presented in a structure analogous to that of the first step of splicing. The products of the reactions are full-length circular intron and unligated exons. For this reason, the circularization reaction is to the benefit of the intron at the expense of the host. The circularization pathway has distinct structural requirements that differ from those of splicing and appears to be specifically suppressed in vivo. The ability to form full-length circles is found in all types of nuclear group I introns, including those from the Tetrahymena ribosomal DNA. The biological function of the full-length circles is not known, but the fact that the circles contain the entire genetic information of the intron suggests a role in intron mobility.

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Year:  2003        PMID: 14624003      PMCID: PMC1370501          DOI: 10.1261/rna.5290903

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  37 in total

1.  Complex group-I introns in nuclear SSU rDNA of red and green algae: evidence of homing-endonuclease pseudogenes in the Bangiophyceae.

Authors:  P Haugen; V A Huss; H Nielsen; S Johansen
Journal:  Curr Genet       Date:  1999-12       Impact factor: 3.886

2.  In vitro self-splicing reactions of the chloroplast group I intron Cr.LSU from Chlamydomonas reinhardtii and in vivo manipulation via gene-replacement.

Authors:  A J Thompson; D L Herrin
Journal:  Nucleic Acids Res       Date:  1991-12-11       Impact factor: 16.971

3.  Naegleria nucleolar introns contain two group I ribozymes with different functions in RNA splicing and processing.

Authors:  C Einvik; W A Decatur; T M Embley; V M Vogt; S Johansen
Journal:  RNA       Date:  1997-07       Impact factor: 4.942

4.  Functional intron+ and intron- rDNA in the same macronucleus of the ciliate Tetrahymena pigmentosa.

Authors:  H Nielsen; J Engberg
Journal:  Biochim Biophys Acta       Date:  1985-05-24

5.  Selection of circularization sites in a group I IVS RNA requires multiple alignments of an internal template-like sequence.

Authors:  M D Been; T R Cech
Journal:  Cell       Date:  1987-09-11       Impact factor: 41.582

Review 6.  Introns as mobile genetic elements.

Authors:  A M Lambowitz; M Belfort
Journal:  Annu Rev Biochem       Date:  1993       Impact factor: 23.643

7.  Autocatalytic cyclization of an excised intervening sequence RNA is a cleavage-ligation reaction.

Authors:  A J Zaug; P J Grabowski; T R Cech
Journal:  Nature       Date:  1983 Feb 17-23       Impact factor: 49.962

8.  Fate of an intervening sequence ribonucleic acid: excision and cyclization of the Tetrahymena ribosomal ribonucleic acid intervening sequence in vivo.

Authors:  S L Brehm; T R Cech
Journal:  Biochemistry       Date:  1983-05-10       Impact factor: 3.162

9.  Specificity from steric restrictions in the guanosine binding pocket of a group I ribozyme.

Authors:  R Russell; D Herschlag
Journal:  RNA       Date:  1999-02       Impact factor: 4.942

10.  Two group I ribozymes with different functions in a nuclear rDNA intron.

Authors:  W A Decatur; C Einvik; S Johansen; V M Vogt
Journal:  EMBO J       Date:  1995-09-15       Impact factor: 11.598

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  26 in total

1.  Long-term evolution of the S788 fungal nuclear small subunit rRNA group I introns.

Authors:  Peik Haugen; Henry Joseph Runge; Debashish Bhattacharya
Journal:  RNA       Date:  2004-07       Impact factor: 4.942

2.  Toward predicting self-splicing and protein-facilitated splicing of group I introns.

Authors:  Quentin Vicens; Paul J Paukstelis; Eric Westhof; Alan M Lambowitz; Thomas R Cech
Journal:  RNA       Date:  2008-09-03       Impact factor: 4.942

Review 3.  Group I introns and inteins: disparate origins but convergent parasitic strategies.

Authors:  Rahul Raghavan; Michael F Minnick
Journal:  J Bacteriol       Date:  2009-08-07       Impact factor: 3.490

Review 4.  Past, present, and future of circRNAs.

Authors:  Ines Lucia Patop; Stas Wüst; Sebastian Kadener
Journal:  EMBO J       Date:  2019-07-25       Impact factor: 11.598

5.  Speciation of a group I intron into a lariat capping ribozyme.

Authors:  Mélanie Meyer; Henrik Nielsen; Vincent Oliéric; Pierre Roblin; Steinar D Johansen; Eric Westhof; Benoît Masquida
Journal:  Proc Natl Acad Sci U S A       Date:  2014-05-12       Impact factor: 11.205

6.  A natural ribozyme with 3',5' RNA ligase activity.

Authors:  Quentin Vicens; Thomas R Cech
Journal:  Nat Chem Biol       Date:  2009-01-04       Impact factor: 15.040

7.  The Mitochondrial Genome of the Sea Anemone Stichodactyla haddoni Reveals Catalytic Introns, Insertion-Like Element, and Unexpected Phylogeny.

Authors:  Steinar Daae Johansen; Sylvia I Chi; Arseny Dubin; Tor Erik Jørgensen
Journal:  Life (Basel)       Date:  2021-04-28

8.  Self-circularizing 5'-ETS RNAs accumulate along with unprocessed pre ribosomal RNAs in growth-stressed Entamoeba histolytica.

Authors:  Abhishek Kumar Gupta; Sunil Kumar Panigrahi; Alok Bhattacharya; Sudha Bhattacharya
Journal:  Sci Rep       Date:  2012-03-06       Impact factor: 4.379

9.  Transcriptome-wide discovery of circular RNAs in Archaea.

Authors:  Miri Danan; Schraga Schwartz; Sarit Edelheit; Rotem Sorek
Journal:  Nucleic Acids Res       Date:  2011-12-02       Impact factor: 16.971

10.  Nuclear group I introns in self-splicing and beyond.

Authors:  Annica Hedberg; Steinar D Johansen
Journal:  Mob DNA       Date:  2013-06-05
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