Literature DB >> 19125157

A natural ribozyme with 3',5' RNA ligase activity.

Quentin Vicens1, Thomas R Cech.   

Abstract

Using electrophoresis, sequencing and enzymatic digestion, we show that the group I intron from the cyanobacterium Anabaena sp. PCC 7120 catalyzes phosphodiester bond formation using a triphosphate on the 5'-terminal nucleotide, much like protein polymerases and engineered ribozymes. In the process, this ribozyme forms a unique circular RNA that incorporates the exogenous guanosine cofactor added during self-splicing. This finding may have relevance to a prebiotic RNA world and to modern biology.

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Year:  2009        PMID: 19125157      PMCID: PMC2897744          DOI: 10.1038/nchembio.136

Source DB:  PubMed          Journal:  Nat Chem Biol        ISSN: 1552-4450            Impact factor:   15.040


  17 in total

1.  The ability to form full-length intron RNA circles is a general property of nuclear group I introns.

Authors:  Henrik Nielsen; Tonje Fiskaa; Asa Birna Birgisdottir; Peik Haugen; Christer Einvik; Steinar Johansen
Journal:  RNA       Date:  2003-12       Impact factor: 4.942

2.  Generation of a catalytic module on a self-folding RNA.

Authors:  Wataru Yoshioka; Yoshiya Ikawa; Luc Jaeger; Hideaki Shiraishi; Tan Inoue
Journal:  RNA       Date:  2004-11-03       Impact factor: 4.942

Review 3.  Forty years of in vitro evolution.

Authors:  Gerald F Joyce
Journal:  Angew Chem Int Ed Engl       Date:  2007       Impact factor: 15.336

4.  Toward predicting self-splicing and protein-facilitated splicing of group I introns.

Authors:  Quentin Vicens; Paul J Paukstelis; Eric Westhof; Alan M Lambowitz; Thomas R Cech
Journal:  RNA       Date:  2008-09-03       Impact factor: 4.942

5.  Conformational switches involved in orchestrating the successive steps of group I RNA splicing.

Authors:  B L Golden; T R Cech
Journal:  Biochemistry       Date:  1996-03-26       Impact factor: 3.162

6.  Autocatalytic cyclization of an excised intervening sequence RNA is a cleavage-ligation reaction.

Authors:  A J Zaug; P J Grabowski; T R Cech
Journal:  Nature       Date:  1983 Feb 17-23       Impact factor: 49.962

7.  New reactions catalyzed by a group II intron ribozyme with RNA and DNA substrates.

Authors:  M Mörl; I Niemer; C Schmelzer
Journal:  Cell       Date:  1992-09-04       Impact factor: 41.582

8.  The intervening sequence of the ribosomal RNA precursor is converted to a circular RNA in isolated nuclei of Tetrahymena.

Authors:  P J Grabowski; A J Zaug; T R Cech
Journal:  Cell       Date:  1981-02       Impact factor: 41.582

Review 9.  Searching genomes for ribozymes and riboswitches.

Authors:  Christian Hammann; Eric Westhof
Journal:  Genome Biol       Date:  2007       Impact factor: 13.583

10.  Molecular modelling of the GIR1 branching ribozyme gives new insight into evolution of structurally related ribozymes.

Authors:  Bertrand Beckert; Henrik Nielsen; Christer Einvik; Steinar D Johansen; Eric Westhof; Benoît Masquida
Journal:  EMBO J       Date:  2008-01-24       Impact factor: 11.598

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  14 in total

1.  Crystal structure of a DNA catalyst.

Authors:  Almudena Ponce-Salvatierra; Katarzyna Wawrzyniak-Turek; Ulrich Steuerwald; Claudia Höbartner; Vladimir Pena
Journal:  Nature       Date:  2016-01-06       Impact factor: 49.962

2.  A ghost in the RNA machine.

Authors:  Niles Lehman
Journal:  Nat Chem Biol       Date:  2009-02       Impact factor: 15.040

Review 3.  Group I introns and inteins: disparate origins but convergent parasitic strategies.

Authors:  Rahul Raghavan; Michael F Minnick
Journal:  J Bacteriol       Date:  2009-08-07       Impact factor: 3.490

4.  Origin of self-replicating biopolymers: autocatalytic feedback can jump-start the RNA world.

Authors:  Meng Wu; Paul G Higgs
Journal:  J Mol Evol       Date:  2009-09-24       Impact factor: 2.395

5.  Evidence of liquid crystal-assisted abiotic ligation of nucleic acids.

Authors:  Tommaso P Fraccia; Giuliano Zanchetta; Valeria Rimoldi; Noel A Clark; Tommaso Bellini
Journal:  Orig Life Evol Biosph       Date:  2015-05-15       Impact factor: 1.950

6.  There is no common ground between science and religion.

Authors:  Antonio G Valdecasas; Luis Boto; Ana Maria Correas
Journal:  J Biosci       Date:  2013-06       Impact factor: 1.826

7.  Speciation of a group I intron into a lariat capping ribozyme.

Authors:  Mélanie Meyer; Henrik Nielsen; Vincent Oliéric; Pierre Roblin; Steinar D Johansen; Eric Westhof; Benoît Masquida
Journal:  Proc Natl Acad Sci U S A       Date:  2014-05-12       Impact factor: 11.205

8.  Self-circularizing 5'-ETS RNAs accumulate along with unprocessed pre ribosomal RNAs in growth-stressed Entamoeba histolytica.

Authors:  Abhishek Kumar Gupta; Sunil Kumar Panigrahi; Alok Bhattacharya; Sudha Bhattacharya
Journal:  Sci Rep       Date:  2012-03-06       Impact factor: 4.379

9.  Transcriptome-wide discovery of circular RNAs in Archaea.

Authors:  Miri Danan; Schraga Schwartz; Sarit Edelheit; Rotem Sorek
Journal:  Nucleic Acids Res       Date:  2011-12-02       Impact factor: 16.971

10.  The origin of life is a spatially localized stochastic transition.

Authors:  Meng Wu; Paul G Higgs
Journal:  Biol Direct       Date:  2012-11-24       Impact factor: 4.540

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