Literature DB >> 14622955

Spectral editing and pattern recognition methods applied to high-resolution magic-angle spinning 1H nuclear magnetic resonance spectroscopy of liver tissues.

Yulan Wang1, Mary E Bollard, Hector Keun, Henrik Antti, Olaf Beckonert, Timothy M Ebbels, John C Lindon, Elaine Holmes, Huiru Tang, Jeremy K Nicholson.   

Abstract

Principal component analysis (PCA) has been applied to three nuclear magnetic resonance (NMR) spectral editing methods, namely, the Carr-Purcell-Meiboom-Gill spin-echo, diffusion editing, and skyline projection of a two-dimensional J-resolved spectrum, obtained from high-resolution magic-angle spinning NMR spectroscopy of liver tissues, to distinguish between control and hydrazine-treated rats. The effects of the toxin on rat liver biochemistry were directly observed and characterized by depleted levels of liver glycogen, choline, taurine, trimethylamine N-oxide, and glucose and by elevated levels of lipids and alanine. The highly unsaturated omega-3-type fatty acid was observed for the first time in hydrazine-treated rat liver. The contributions of the metabolites to the separation of control from dosed liver tissues varied depending on the type of spectral editing method used. We have shown that subtle changes in the metabolic profiles can be selectively amplified using a metabonomics approach based on the different NMR spectral editing techniques in conjunction with PCA.

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Year:  2003        PMID: 14622955     DOI: 10.1016/j.ab.2003.07.026

Source DB:  PubMed          Journal:  Anal Biochem        ISSN: 0003-2697            Impact factor:   3.365


  15 in total

1.  Global urinary metabolic profiling procedures using gas chromatography-mass spectrometry.

Authors:  Eric Chun Yong Chan; Kishore Kumar Pasikanti; Jeremy K Nicholson
Journal:  Nat Protoc       Date:  2011-09-08       Impact factor: 13.491

2.  High-resolution magic-angle-spinning NMR spectroscopy for metabolic profiling of intact tissues.

Authors:  Olaf Beckonert; Muireann Coen; Hector C Keun; Yulan Wang; Timothy M D Ebbels; Elaine Holmes; John C Lindon; Jeremy K Nicholson
Journal:  Nat Protoc       Date:  2010-05-13       Impact factor: 13.491

3.  The future of liquid chromatography-mass spectrometry (LC-MS) in metabolic profiling and metabolomic studies for biomarker discovery.

Authors:  Thomas O Metz; Qibin Zhang; Jason S Page; Yufeng Shen; Stephen J Callister; Jon M Jacobs; Richard D Smith
Journal:  Biomark Med       Date:  2007-06       Impact factor: 2.851

4.  Discovery of metabolite features for the modelling and analysis of high-resolution NMR spectra.

Authors:  Hyun-Woo Cho; Seoung Bum Kim; Myong K Jeong; Youngja Park; Nana Gletsu Miller; Thomas R Ziegler; Dean P Jones
Journal:  Int J Data Min Bioinform       Date:  2008       Impact factor: 0.667

5.  Metabolomics-based approach for assessing the toxicity mechanisms of dibutyl phthalate to abalone (Haliotis diversicolor supertexta).

Authors:  Jin Zhou; Baiyang Chen; Zhonghua Cai
Journal:  Environ Sci Pollut Res Int       Date:  2014-11-22       Impact factor: 4.223

6.  Green Chemistry Preservation and Extraction of Biospecimens for Multi-omic Analyses.

Authors:  Andrey P Tikunov; Jeremiah D Tipton; Timothy J Garrett; Sachi V Shinde; Hong Jin Kim; David A Gerber; Laura E Herring; Lee M Graves; Jeffrey M Macdonald
Journal:  Methods Mol Biol       Date:  2022

Review 7.  The metabolomic window into hepatobiliary disease.

Authors:  Diren Beyoğlu; Jeffrey R Idle
Journal:  J Hepatol       Date:  2013-05-25       Impact factor: 25.083

8.  In vivo biodistribution and biological impact of injected carbon nanotubes using magnetic resonance techniques.

Authors:  Achraf Al Faraj; Florence Fauvelle; Nathalie Luciani; Ghislaine Lacroix; Michael Levy; Yannick Crémillieux; Emmanuelle Canet-Soulas
Journal:  Int J Nanomedicine       Date:  2011-02-15

9.  NMR-based metabolomic investigations on the differential responses in adductor muscles from two pedigrees of Manila clam Ruditapes philippinarum to Cadmium and Zinc.

Authors:  Huifeng Wu; Xiaoli Liu; Jianmin Zhao; Junbao Yu
Journal:  Mar Drugs       Date:  2011-09-19       Impact factor: 6.085

10.  MetaboMiner--semi-automated identification of metabolites from 2D NMR spectra of complex biofluids.

Authors:  Jianguo Xia; Trent C Bjorndahl; Peter Tang; David S Wishart
Journal:  BMC Bioinformatics       Date:  2008-11-28       Impact factor: 3.169

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