Literature DB >> 18767354

Discovery of metabolite features for the modelling and analysis of high-resolution NMR spectra.

Hyun-Woo Cho1, Seoung Bum Kim, Myong K Jeong, Youngja Park, Nana Gletsu Miller, Thomas R Ziegler, Dean P Jones.   

Abstract

This study presents three feature selection methods for identifying the metabolite features in nuclear magnetic resonance spectra that contribute to the distinction of samples among varying nutritional conditions. Principal component analysis, Fisher discriminant analysis, and Partial Least Square Discriminant Analysis (PLS-DA) were used to calculate the importance of individual metabolite feature in spectra. Moreover, an Orthogonal Signal Correction (OSC) filter was used to eliminate unnecessary variations in spectra. We evaluated the presented methods by comparing the ability of classification based on the features selected by each method. The result showed that the best classification was achieved from an OSC-PLS-DA model.

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Year:  2008        PMID: 18767354      PMCID: PMC3883573          DOI: 10.1504/ijdmb.2008.019097

Source DB:  PubMed          Journal:  Int J Data Min Bioinform        ISSN: 1748-5673            Impact factor:   0.667


  13 in total

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2.  Development and validation of a method for the analysis of a pharmaceutical preparation by near-infrared diffuse reflectance spectroscopy.

Authors:  M Blanco; J Coello; A Eustaquio; H Iturriaga; S Maspoch
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Review 3.  Metabonomics: a platform for studying drug toxicity and gene function.

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4.  Analysis of longitudinal metabolomics data.

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5.  Metabonomic characterization of genetic variations in toxicological and metabolic responses using probabilistic neural networks.

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6.  Quantification of plasma lipids and apolipoproteins by use of proton NMR spectroscopy, multivariate and neural network analysis.

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9.  Metabonomic investigations in mice infected with Schistosoma mansoni: an approach for biomarker identification.

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Journal:  Proc Natl Acad Sci U S A       Date:  2004-08-16       Impact factor: 11.205

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  26 in total

1.  Individual variation in macronutrient regulation measured by proton magnetic resonance spectroscopy of human plasma.

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2.  Metabolic effects of albumin therapy in acute lung injury measured by proton nuclear magnetic resonance spectroscopy of plasma: a pilot study.

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3.  Metabolomics profile comparisons of irradiated and nonirradiated stored donor red blood cells.

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Review 6.  Current mathematical methods used in QSAR/QSPR studies.

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Journal:  Int J Mol Sci       Date:  2009-04-29       Impact factor: 6.208

7.  Discrepancies in metabolomic biomarker identification from patient-derived lung cancer revealed by combined variation in data pre-treatment and imputation methods.

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8.  Evaluation of disease staging and chemotherapeutic response in non-small cell lung cancer from patient tumor-derived metabolomic data.

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9.  Elucidating the Antimycobacterial Mechanism of Action of Ciprofloxacin Using Metabolomics.

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10.  Random forest in clinical metabolomics for phenotypic discrimination and biomarker selection.

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