Literature DB >> 14604583

How robust are switches in intracellular signaling cascades?

Nils Blüthgen1, Hanspeter Herzel.   

Abstract

Since all-or-none decisions of the cell are controlled by extracellular signals, cells have biochemical switches within their intracellular signaling networks. Central elements of these switches are multisite phosphorylation, enzymic saturation, and amplification by cascades. Moreover, positive feedback can contribute to switch-like behavior termed also ultrasensitivity. Here we analyse the robustness of these mechanisms exemplified by models of the three-molecule MAPK-cascade and the single-molecule Goldbeter-Koshland switch. We show that the ultrasensitivity in the MAPK-cascades is more robust against changes of the kinetic parameters than the Goldbeter-Koshland switch. If multiple parameters are changed randomly, the effects of parameter changes can compensate each other in the cascade leading to a remarkable robustness of the switch-like behavior. The different degrees of robustness can be traced back to the different mechanisms of generating ultrasensitivity. While in the Goldbeter-Koshland switch the saturation of the enzymes are crucial, in the MAPK-cascade the adjustment of working ranges determines the ultrasensitivity. Our results indicate that amplification of ultrasensitivity in cascades and multisite phosphorylation might be a design principle to achieve robust switches.

Mesh:

Year:  2003        PMID: 14604583     DOI: 10.1016/s0022-5193(03)00247-9

Source DB:  PubMed          Journal:  J Theor Biol        ISSN: 0022-5193            Impact factor:   2.691


  29 in total

1.  Properties of switch-like bioregulatory networks studied by simulation of the hypoxia response control system.

Authors:  Kurt W Kohn; Joseph Riss; Olga Aprelikova; John N Weinstein; Yves Pommier; J Carl Barrett
Journal:  Mol Biol Cell       Date:  2004-04-23       Impact factor: 4.138

2.  Gene dosage balance in cellular pathways: implications for dominance and gene duplicability.

Authors:  Reiner A Veitia
Journal:  Genetics       Date:  2004-09       Impact factor: 4.562

Review 3.  Computational modelling of the receptor-tyrosine-kinase-activated MAPK pathway.

Authors:  Richard J Orton; Oliver E Sturm; Vladislav Vyshemirsky; Muffy Calder; David R Gilbert; Walter Kolch
Journal:  Biochem J       Date:  2005-12-01       Impact factor: 3.857

4.  Modeling reveals that dynamic regulation of c-FLIP levels determines cell-to-cell distribution of CD95-mediated apoptosis.

Authors:  Hannu T Toivonen; Annika Meinander; Tomoko Asaoka; Mia Westerlund; Frank Pettersson; Andrey Mikhailov; John E Eriksson; Henrik Saxén
Journal:  J Biol Chem       Date:  2011-02-15       Impact factor: 5.157

5.  Long signaling cascades tend to attenuate retroactivity.

Authors:  Hamid R Ossareh; Alejandra C Ventura; Sofia D Merajver; Domitilla Del Vecchio
Journal:  Biophys J       Date:  2011-04-06       Impact factor: 4.033

6.  Impact of upstream and downstream constraints on a signaling module's ultrasensitivity.

Authors:  Edgar Altszyler; Alejandra Ventura; Alejandro Colman-Lerner; Ariel Chernomoretz
Journal:  Phys Biol       Date:  2014-10-14       Impact factor: 2.583

Review 7.  Robustness of signal transduction pathways.

Authors:  Nils Blüthgen; Stefan Legewie
Journal:  Cell Mol Life Sci       Date:  2012-09-25       Impact factor: 9.261

8.  Dimerization-based control of cooperativity.

Authors:  Mehdi Bouhaddou; Marc R Birtwistle
Journal:  Mol Biosyst       Date:  2014-07

Review 9.  Four-dimensional dynamics of MAPK information processing systems.

Authors:  Boris N Kholodenko; Marc R Birtwistle
Journal:  Wiley Interdiscip Rev Syst Biol Med       Date:  2009 Jul-Aug

10.  Quantitative Analysis of Robustness of Dynamic Response and Signal Transfer in Insulin mediated PI3K/AKT Pathway.

Authors:  Shibin Mathew; Ipsita Banerjee
Journal:  Comput Chem Eng       Date:  2014-12-04       Impact factor: 3.845

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.