Literature DB >> 14602908

Arginine/serine repeats are sufficient to constitute a splicing activation domain.

Dana Philipps1, Alicia M Celotto, Qiao-Qiao Wang, Rosa S Tarng, Brenton R Graveley.   

Abstract

SR proteins are essential pre-mRNA splicing factors that have been shown to bind a number of exonic splicing enhancers where they function to stimulate the splicing of adjacent introns. Members of the SR protein family contain one or two N-terminal RNA binding domains, as well as a C-terminal arginine-serine (RS) rich domain. The RS domains mediate protein-protein interactions with other RS domain containing proteins and are essential for many, but not all, SR protein functions. Hybrid proteins containing an RS domain fused to the bacteriophage MS2 coat protein are sufficient to activate enhancer-dependent splicing in HeLa cell nuclear extract when bound to the pre-mRNA. Here we report progress towards determining the protein sequence requirements for RS domain function. We show that the RS domains from non-SR proteins can also function as splicing activation domains when tethered to the pre-mRNA. Truncation experiments with the RS domain of the human SR protein 9G8 identified a 29 amino acid segment, containing 26 arginine or serine residues, that is sufficient to activate splicing when fused to MS2. We also show that synthetic domains composed solely of RS dipeptides are capable of activating splicing, although their potency is proportional to their size.

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Year:  2003        PMID: 14602908      PMCID: PMC275541          DOI: 10.1093/nar/gkg845

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  22 in total

1.  SR proteins: a conserved family of pre-mRNA splicing factors.

Authors:  A M Zahler; W S Lane; J A Stolk; M B Roth
Journal:  Genes Dev       Date:  1992-05       Impact factor: 11.361

2.  Analysis of the functional specificity of RS domains in vivo.

Authors:  B Dauwalder; W Mattox
Journal:  EMBO J       Date:  1998-10-15       Impact factor: 11.598

3.  The splicing factor U2AF35 mediates critical protein-protein interactions in constitutive and enhancer-dependent splicing.

Authors:  P Zuo; T Maniatis
Journal:  Genes Dev       Date:  1996-06-01       Impact factor: 11.361

Review 4.  Mechanical devices of the spliceosome: motors, clocks, springs, and things.

Authors:  J P Staley; C Guthrie
Journal:  Cell       Date:  1998-02-06       Impact factor: 41.582

5.  Interaction of U2AF65 RS region with pre-mRNA branch point and promotion of base pairing with U2 snRNA [corrected].

Authors:  J Valcárcel; R K Gaur; R Singh; M R Green
Journal:  Science       Date:  1996-09-20       Impact factor: 47.728

6.  A serine/arginine-rich domain in the human U1 70k protein is necessary and sufficient for ASF/SF2 binding.

Authors:  W Cao; M A Garcia-Blanco
Journal:  J Biol Chem       Date:  1998-08-07       Impact factor: 5.157

7.  Specific interactions between proteins implicated in splice site selection and regulated alternative splicing.

Authors:  J Y Wu; T Maniatis
Journal:  Cell       Date:  1993-12-17       Impact factor: 41.582

8.  Protein-protein interactions and 5'-splice-site recognition in mammalian mRNA precursors.

Authors:  J D Kohtz; S F Jamison; C L Will; P Zuo; R Lührmann; M A Garcia-Blanco; J L Manley
Journal:  Nature       Date:  1994-03-10       Impact factor: 49.962

9.  Arginine/serine-rich domains of SR proteins can function as activators of pre-mRNA splicing.

Authors:  B R Graveley; T Maniatis
Journal:  Mol Cell       Date:  1998-04       Impact factor: 17.970

10.  Functional analysis of pre-mRNA splicing factor SF2/ASF structural domains.

Authors:  J F Cáceres; A R Krainer
Journal:  EMBO J       Date:  1993-12       Impact factor: 11.598

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  20 in total

1.  The adipogenic transcriptional cofactor ZNF638 interacts with splicing regulators and influences alternative splicing.

Authors:  Chen Du; Xinran Ma; Sunitha Meruvu; Lynne Hugendubler; Elisabetta Mueller
Journal:  J Lipid Res       Date:  2014-07-14       Impact factor: 5.922

2.  An interaction between U2AF 65 and CF I(m) links the splicing and 3' end processing machineries.

Authors:  Stefania Millevoi; Clarisse Loulergue; Sabine Dettwiler; Sarah Zeïneb Karaa; Walter Keller; Michael Antoniou; Stéphan Vagner
Journal:  EMBO J       Date:  2006-10-05       Impact factor: 11.598

3.  RS domains contact splicing signals and promote splicing by a common mechanism in yeast through humans.

Authors:  Haihong Shen; Michael R Green
Journal:  Genes Dev       Date:  2006-06-09       Impact factor: 11.361

Review 4.  Chromatin dynamics associated with HIV-1 Tat-activated transcription.

Authors:  Rebecca Easley; Rachel Van Duyne; Will Coley; Irene Guendel; Sherry Dadgar; Kylene Kehn-Hall; Fatah Kashanchi
Journal:  Biochim Biophys Acta       Date:  2009-08-27

Review 5.  The impact of alternative splicing in vivo: mouse models show the way.

Authors:  Tarik Möröy; Florian Heyd
Journal:  RNA       Date:  2007-06-11       Impact factor: 4.942

6.  Engineering splicing factors with designed specificities.

Authors:  Yang Wang; Cheom-Gil Cheong; Traci M Tanaka Hall; Zefeng Wang
Journal:  Nat Methods       Date:  2009-10-04       Impact factor: 28.547

7.  Multiple aromatic side chains within a disordered structure are critical for transcription and transforming activity of EWS family oncoproteins.

Authors:  King Pan Ng; Gary Potikyan; Rupert O V Savene; Christopher T Denny; Vladimir N Uversky; Kevin A W Lee
Journal:  Proc Natl Acad Sci U S A       Date:  2007-01-03       Impact factor: 11.205

8.  Non-invasive and high-throughput interrogation of exon-specific isoform expression.

Authors:  Dong-Jiunn Jeffery Truong; Teeradon Phlairaharn; Bianca Eßwein; Christoph Gruber; Deniz Tümen; Enikő Baligács; Niklas Armbrust; Francesco Leandro Vaccaro; Eva-Maria Lederer; Eva Magdalena Beck; Julian Geilenkeuser; Simone Göppert; Luisa Krumwiede; Christian Grätz; Gerald Raffl; Dominic Schwarz; Martin Zirngibl; Milica Živanić; Maren Beyer; Johann Dietmar Körner; Tobias Santl; Valentin Evsyukov; Tabea Strauß; Sigrid C Schwarz; Günter U Höglinger; Peter Heutink; Sebastian Doll; Marcus Conrad; Florian Giesert; Wolfgang Wurst; Gil Gregor Westmeyer
Journal:  Nat Cell Biol       Date:  2021-06-03       Impact factor: 28.824

9.  Comparative analysis of serine/arginine-rich proteins across 27 eukaryotes: insights into sub-family classification and extent of alternative splicing.

Authors:  Dale N Richardson; Mark F Rogers; Adam Labadorf; Asa Ben-Hur; Hui Guo; Andrew H Paterson; Anireddy S N Reddy
Journal:  PLoS One       Date:  2011-09-14       Impact factor: 3.240

10.  SRSF1 and SRSF9 RNA binding proteins promote Wnt signalling-mediated tumorigenesis by enhancing β-catenin biosynthesis.

Authors:  Yu Fu; Binlu Huang; Zhen Shi; Jiayu Han; Ying Wang; Jieqiong Huangfu; Wei Wu
Journal:  EMBO Mol Med       Date:  2013-04-17       Impact factor: 12.137

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