Literature DB >> 19716452

Chromatin dynamics associated with HIV-1 Tat-activated transcription.

Rebecca Easley1, Rachel Van Duyne, Will Coley, Irene Guendel, Sherry Dadgar, Kylene Kehn-Hall, Fatah Kashanchi.   

Abstract

Chromatin remodeling is an essential event for HIV-1 transcription. Over the last two decades this field of research has come to the forefront, as silencing of the HIV-1 provirus through chromatin modifications has been linked to latency. Here, we focus on chromatin remodeling, especially in relation to the transactivator Tat, and review the most important and newly emerging studies that investigate remodeling mechanisms. We begin by discussing covalent modifications that can alter chromatin structure including acetylation, deacetylation, and methylation, as well as topics addressing the interplay between chromatin remodeling and splicing. Next, we focus on complexes that use the energy of ATP to remove or secure nucleosomes and can additionally act to control HIV-1 transcription. Finally, we cover recent literature on viral microRNAs which have been shown to alter chromatin structure by inducing methylation or even by remodeling nucleosomes. 2009 Elsevier B.V. All rights reserved.

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Year:  2009        PMID: 19716452      PMCID: PMC2838975          DOI: 10.1016/j.bbagrm.2009.08.008

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  172 in total

Review 1.  Viral protein R of HIV-1.

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Journal:  Rev Med Virol       Date:  1999 Jan-Mar       Impact factor: 6.989

2.  Components of the DNA methylation system of chromatin control are RNA-binding proteins.

Authors:  Linda Jeffery; Sara Nakielny
Journal:  J Biol Chem       Date:  2004-09-01       Impact factor: 5.157

Review 3.  The multifactorial nature of HIV-1 latency.

Authors:  Kara Lassen; Yefei Han; Yan Zhou; Janet Siliciano; Robert F Siliciano
Journal:  Trends Mol Med       Date:  2004-11       Impact factor: 11.951

4.  Control of the histone-acetyltransferase activity of Tip60 by the HIV-1 transactivator protein, Tat.

Authors:  M Creaven; F Hans; V Mutskov; E Col; C Caron; S Dimitrov; S Khochbin
Journal:  Biochemistry       Date:  1999-07-06       Impact factor: 3.162

5.  Transcription of the HIV-1 LTR is regulated by the density of DNA CpG methylation.

Authors:  K A Gutekunst; F Kashanchi; J N Brady; D P Bednarik
Journal:  J Acquir Immune Defic Syndr (1988)       Date:  1993-06

6.  Regulation of transcription by a protein methyltransferase.

Authors:  D Chen; H Ma; H Hong; S S Koh; S M Huang; B T Schurter; D W Aswad; M R Stallcup
Journal:  Science       Date:  1999-06-25       Impact factor: 47.728

7.  c-MYC interacts with INI1/hSNF5 and requires the SWI/SNF complex for transactivation function.

Authors:  S W Cheng; K P Davies; E Yung; R J Beltran; J Yu; G V Kalpana
Journal:  Nat Genet       Date:  1999-05       Impact factor: 38.330

8.  Characterization of the inducer of short transcripts, a human immunodeficiency virus type 1 transcriptional element that activates the synthesis of short RNAs.

Authors:  M Sheldon; R Ratnasabapathy; N Hernandez
Journal:  Mol Cell Biol       Date:  1993-02       Impact factor: 4.272

9.  Expression of the c-myc proto-oncogene is essential for HIV-1 infection in activated T cells.

Authors:  Y Sun; E A Clark
Journal:  J Exp Med       Date:  1999-05-03       Impact factor: 14.307

10.  Chromatin disruption in the promoter of human immunodeficiency virus type 1 during transcriptional activation.

Authors:  E Verdin; P Paras; C Van Lint
Journal:  EMBO J       Date:  1993-08       Impact factor: 11.598

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  31 in total

Review 1.  Chromatin-mediated regulation of cytomegalovirus gene expression.

Authors:  Matthew B Reeves
Journal:  Virus Res       Date:  2010-09-25       Impact factor: 3.303

2.  HIV-1 Tat upregulates expression of histone deacetylase-2 (HDAC2) in human neurons: implication for HIV-associated neurocognitive disorder (HAND).

Authors:  Zainulabedin M Saiyed; Nimisha Gandhi; Marisela Agudelo; Jessica Napuri; Thangavel Samikkannu; Pichili V B Reddy; Pradnya Khatavkar; Adriana Yndart; Shailendra K Saxena; Madhavan P N Nair
Journal:  Neurochem Int       Date:  2011-02-17       Impact factor: 3.921

3.  The HIV-1 Tat protein has a versatile role in activating viral transcription.

Authors:  Atze T Das; Alex Harwig; Ben Berkhout
Journal:  J Virol       Date:  2011-07-13       Impact factor: 5.103

4.  Real-time visualization of chromatin modification in isolated nuclei.

Authors:  Luca Sardo; Angel Lin; Svetlana Khakhina; Lucas Beckman; Luis Ricon; Weam Elbezanti; Tara Jaison; Harshad Vishwasrao; Hari Shroff; Christopher Janetopoulos; Zachary A Klase
Journal:  J Cell Sci       Date:  2017-07-25       Impact factor: 5.285

Review 5.  Interaction between endogenous bacterial flora and latent HIV infection.

Authors:  Ann Florence B Victoriano; Kenichi Imai; Takashi Okamoto
Journal:  Clin Vaccine Immunol       Date:  2013-04-24

6.  An analog of the natural steroidal alkaloid cortistatin A potently suppresses Tat-dependent HIV transcription.

Authors:  Guillaume Mousseau; Mark A Clementz; Wendy N Bakeman; Nisha Nagarsheth; Michael Cameron; Jun Shi; Phil Baran; Rémi Fromentin; Nicolas Chomont; Susana T Valente
Journal:  Cell Host Microbe       Date:  2012-07-19       Impact factor: 21.023

7.  The Short Isoform of BRD4 Promotes HIV-1 Latency by Engaging Repressive SWI/SNF Chromatin-Remodeling Complexes.

Authors:  Ryan J Conrad; Parinaz Fozouni; Sean Thomas; Hendrik Sy; Qiang Zhang; Ming-Ming Zhou; Melanie Ott
Journal:  Mol Cell       Date:  2017-08-24       Impact factor: 17.970

8.  SMYD2-Mediated Histone Methylation Contributes to HIV-1 Latency.

Authors:  Daniela Boehm; Mark Jeng; Gregory Camus; Andrea Gramatica; Roland Schwarzer; Jeffrey R Johnson; Philip A Hull; Mauricio Montano; Naoki Sakane; Sara Pagans; Robert Godin; Steven G Deeks; Nevan J Krogan; Warner C Greene; Melanie Ott
Journal:  Cell Host Microbe       Date:  2017-05-10       Impact factor: 21.023

9.  FACT Proteins, SUPT16H and SSRP1, Are Transcriptional Suppressors of HIV-1 and HTLV-1 That Facilitate Viral Latency.

Authors:  Huachao Huang; Netty Santoso; Derek Power; Sydney Simpson; Michael Dieringer; Hongyu Miao; Katerina Gurova; Chou-Zen Giam; Stephen J Elledge; Jian Zhu
Journal:  J Biol Chem       Date:  2015-09-16       Impact factor: 5.157

Review 10.  Epigenetics, drugs of abuse, and the retroviral promoter.

Authors:  Jasmine Shirazi; Sonia Shah; Divya Sagar; Michael R Nonnemacher; Brian Wigdahl; Zafar K Khan; Pooja Jain
Journal:  J Neuroimmune Pharmacol       Date:  2013-11-12       Impact factor: 4.147

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