Literature DB >> 17563071

The impact of alternative splicing in vivo: mouse models show the way.

Tarik Möröy1, Florian Heyd.   

Abstract

Alternative splicing is widely believed to have a major impact on almost all biological processes since it increases proteome complexity and thereby controls protein function. Recently, gene targeting in mice has been used to create in vivo models to study the regulation and consequences of alternative splicing. The evidence accumulated so far argues for a nonredundant, highly specific role of individual splicing factors in mammalian development, and furthermore, demonstrates the importance of distinct protein isoforms in vivo. In this review, we will compare phenotypes of mouse models for alternative splicing to crystallize common themes and to put them into perspective with the available in vitro data.

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Year:  2007        PMID: 17563071      PMCID: PMC1924907          DOI: 10.1261/rna.554607

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  128 in total

1.  SC35 plays a role in T cell development and alternative splicing of CD45.

Authors:  H Y Wang; X Xu; J H Ding; J R Bermingham; X D Fu
Journal:  Mol Cell       Date:  2001-02       Impact factor: 17.970

2.  Distinct functions of the two isoforms of dopamine D2 receptors.

Authors:  A Usiello; J H Baik; F Rougé-Pont; R Picetti; A Dierich; M LeMeur; P V Piazza; E Borrelli
Journal:  Nature       Date:  2000-11-09       Impact factor: 49.962

3.  A splicing switch and gain-of-function mutation in FgfR2-IIIc hemizygotes causes Apert/Pfeiffer-syndrome-like phenotypes.

Authors:  M K Hajihosseini; S Wilson; L De Moerlooze; C Dickson
Journal:  Proc Natl Acad Sci U S A       Date:  2001-03-27       Impact factor: 11.205

4.  Muscleblind localizes to nuclear foci of aberrant RNA in myotonic dystrophy types 1 and 2.

Authors:  A Mankodi; C R Urbinati; Q P Yuan; R T Moxley; V Sansone; M Krym; D Henderson; M Schalling; M S Swanson; C A Thornton
Journal:  Hum Mol Genet       Date:  2001-09-15       Impact factor: 6.150

5.  Aberrant regulation of insulin receptor alternative splicing is associated with insulin resistance in myotonic dystrophy.

Authors:  R S Savkur; A V Philips; T A Cooper
Journal:  Nat Genet       Date:  2001-09       Impact factor: 38.330

6.  Two splice variants of the Wilms' tumor 1 gene have distinct functions during sex determination and nephron formation.

Authors:  A Hammes; J K Guo; G Lutsch; J R Leheste; D Landrock; U Ziegler; M C Gubler; A Schedl
Journal:  Cell       Date:  2001-08-10       Impact factor: 41.582

7.  Fibroblast growth factor receptor 2-IIIb acts upstream of Shh and Fgf4 and is required for limb bud maintenance but not for the induction of Fgf8, Fgf10, Msx1, or Bmp4.

Authors:  J M Revest; B Spencer-Dene; K Kerr; L De Moerlooze; I Rosewell; C Dickson
Journal:  Dev Biol       Date:  2001-03-01       Impact factor: 3.582

8.  Dopamine D2 long receptor-deficient mice display alterations in striatum-dependent functions.

Authors:  Y Wang; R Xu; T Sasaoka; S Tonegawa; M P Kung; E B Sankoorikal
Journal:  J Neurosci       Date:  2000-11-15       Impact factor: 6.167

9.  Replacement of the muscle-specific sarcoplasmic reticulum Ca(2+)-ATPase isoform SERCA2a by the nonmuscle SERCA2b homologue causes mild concentric hypertrophy and impairs contraction-relaxation of the heart.

Authors:  M Ver Heyen; S Heymans; G Antoons; T Reed; M Periasamy; B Awede; J Lebacq; P Vangheluwe; M Dewerchin; D Collen; K Sipido; P Carmeliet; F Wuytack
Journal:  Circ Res       Date:  2001-10-26       Impact factor: 17.367

10.  RNA CUG repeats sequester CUGBP1 and alter protein levels and activity of CUGBP1.

Authors:  N A Timchenko; Z J Cai; A L Welm; S Reddy; T Ashizawa; L T Timchenko
Journal:  J Biol Chem       Date:  2000-12-21       Impact factor: 5.157

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  36 in total

1.  Disruption of the developmentally-regulated Col2a1 pre-mRNA alternative splicing switch in a transgenic knock-in mouse model.

Authors:  Renate Lewis; Soumya Ravindran; Louisa Wirthlin; Geoffrey Traeger; Russell J Fernandes; Audrey McAlinden
Journal:  Matrix Biol       Date:  2012-01-09       Impact factor: 11.583

2.  A long nuclear-retained non-coding RNA regulates synaptogenesis by modulating gene expression.

Authors:  Delphine Bernard; Kannanganattu V Prasanth; Vidisha Tripathi; Sabrina Colasse; Tetsuya Nakamura; Zhenyu Xuan; Michael Q Zhang; Frédéric Sedel; Laurent Jourdren; Fanny Coulpier; Antoine Triller; David L Spector; Alain Bessis
Journal:  EMBO J       Date:  2010-08-20       Impact factor: 11.598

3.  Thymopoietin Beta and Gamma Isoforms as a Potential Diagnostic Molecular Marker for Breast Cancer: Preliminary Data.

Authors:  Daniel Marrero-Rodríguez; Keiko Taniguchi-Ponciano; Julio Lopez-Sleman; Pablo Romero-Morelos; Monica Mendoza-Rodríguez; Israel Garcia; Victor Huerta-Padilla; Alejandra Mantilla; Armando Duarte; Patricia Piña; Miriam Rodriguez-Esquivel; Ricardo Lopez-Romero; Jorge Parrazal-Romero; Salvador Tobias-Alonso; Florinda Jimenez-Vega; Mario Alvarez-Blanco; Mauricio Salcedo
Journal:  Pathol Oncol Res       Date:  2015-04-04       Impact factor: 3.201

Review 4.  Coordinate regulation of mRNA decay networks by GU-rich elements and CELF1.

Authors:  Irina Vlasova-St Louis; Paul R Bohjanen
Journal:  Curr Opin Genet Dev       Date:  2011-04-13       Impact factor: 5.578

Review 5.  Function of alternative splicing.

Authors:  Olga Kelemen; Paolo Convertini; Zhaiyi Zhang; Yuan Wen; Manli Shen; Marina Falaleeva; Stefan Stamm
Journal:  Gene       Date:  2012-08-15       Impact factor: 3.688

6.  RNA helicase p68 (DDX5) regulates tau exon 10 splicing by modulating a stem-loop structure at the 5' splice site.

Authors:  Amar Kar; Kazuo Fushimi; Xiaohong Zhou; Payal Ray; Chen Shi; Xiaoping Chen; Zhiren Liu; She Chen; Jane Y Wu
Journal:  Mol Cell Biol       Date:  2011-02-22       Impact factor: 4.272

7.  Two splicing factors carrying serine-arginine motifs, TSR1 and TSR1IP, regulate splicing, mRNA stability, and rRNA processing in Trypanosoma brucei.

Authors:  Sachin Kumar Gupta; Vaibhav Chikne; Dror Eliaz; Itai Dov Tkacz; Ilana Naboishchikov; Shai Carmi; Hiba Waldman Ben-Asher; Shulamit Michaeli
Journal:  RNA Biol       Date:  2014-05-13       Impact factor: 4.652

8.  Neurofibromatosis type 1 alternative splicing is a key regulator of Ras signaling in neurons.

Authors:  Melissa N Hinman; Alok Sharma; Guangbin Luo; Hua Lou
Journal:  Mol Cell Biol       Date:  2014-04-07       Impact factor: 4.272

9.  RNA-Seq reveals different mRNA abundance of transporters and their alternative transcript isoforms during liver development.

Authors:  Julia Yue Cui; Sumedha S Gunewardena; Byunggil Yoo; Jie Liu; Helen J Renaud; Hong Lu; Xiao-bo Zhong; Curtis D Klaassen
Journal:  Toxicol Sci       Date:  2012-03-27       Impact factor: 4.849

Review 10.  MALAT1 -- a paradigm for long noncoding RNA function in cancer.

Authors:  Tony Gutschner; Monika Hämmerle; Sven Diederichs
Journal:  J Mol Med (Berl)       Date:  2013-03-26       Impact factor: 4.599

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