Literature DB >> 14586507

Targeted mapping of a sugarcane rust resistance gene (Bru1) using bulked segregant analysis and AFLP markers.

C Asnaghi1, D Roques, S Ruffel, C Kaye, J-Y Hoarau, H Télismart, J C Girard, L M Raboin, A M Risterucci, L Grivet, A D'Hont.   

Abstract

The presence of a major resistance gene (Bru1) for brown rust in the sugarcane cultivar R570 (2n about 115) was confirmed by analyzing segregation of rust resistance in a large population of 658 individuals, derived from selfing of clone R570. A subset of this population was analyzed with AFLP and bulked segregant analysis (BSA) to develop a detailed genetic map around the resistance gene. Four hundred and forty three primer pairs were used resulting in the identification of eight AFLP markers surrounding the resistance gene in an interval of 10 cM, with the closest markers located at 1.9 and 2.2 cM on each side of the gene. Efficiency of the AFLP/BSA applied to the complex polyploid genome of sugarcane is discussed, as well as the potential of the newly identified AFLP markers for developing a map-based cloning approach exploiting, synteny conservation with sorghum.

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Year:  2003        PMID： 14586507     DOI： 10.1007/s00122-003-1487-6

Source DB:  PubMed          Journal:  Theor Appl Genet        ISSN： 0040-5752            Impact factor:   5.699


  19 in total

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Authors:  J L Bennetzen
Journal:  Plant Cell       Date:  2000-07       Impact factor: 11.277

2.  A bacterial artificial chromosome library for sugarcane.

Authors:  J P Tomkins; Y Yu; H Miller-Smith; D A Frisch; S S Woo; R A Wing
Journal:  Theor Appl Genet       Date:  1999-08       Impact factor: 5.699

3.  Identification of markers linked to disease-resistance genes by bulked segregant analysis: a rapid method to detect markers in specific genomic regions by using segregating populations.

Authors:  R W Michelmore; I Paran; R V Kesseli
Journal:  Proc Natl Acad Sci U S A       Date:  1991-11-01       Impact factor: 11.205

4.  Comparative genetic mapping between duplicated segments on maize chromosomes 3 and 8 and homoeologous regions in sorghum and sugarcane.

Authors:  P Dufour; L Grivet; A D'Hont; M Deu; G Trouche; J C Glaszmann; P Hamon
Journal:  Theor Appl Genet       Date:  1996-06       Impact factor: 5.699

5.  A putative major gene for rust resistance linked with a RFLP marker in sugarcane cultivar 'R570'.

Authors:  J H Daugrois; L Grivet; D Roques; J Y Hoarau; H Lombard; J C Glaszmann; A D'Hont
Journal:  Theor Appl Genet       Date:  1996-06       Impact factor: 5.699

6.  AFLP: a new technique for DNA fingerprinting.

Authors:  P Vos; R Hogers; M Bleeker; M Reijans; T van de Lee; M Hornes; A Frijters; J Pot; J Peleman; M Kuiper
Journal:  Nucleic Acids Res       Date:  1995-11-11       Impact factor: 16.971

7.  Comparative mapping of the two wheat leaf rust resistance loci Lr1 and Lr10 in rice and barley.

Authors:  F Gallego; C Feuillet; M Messmer; A Penger; A Graner; M Yano; T Sasaki; B Keller
Journal:  Genome       Date:  1998-06       Impact factor: 2.166

8.  Characterisation of the double genome structure of modern sugarcane cultivars (Saccharum spp.) by molecular cytogenetics.

Authors:  A D'Hont; L Grivet; P Feldmann; S Rao; N Berding; J C Glaszmann
Journal:  Mol Gen Genet       Date:  1996-03-07

9.  Rice-barley synteny and its application to saturation mapping of the barley Rpg1 region.

Authors:  A Kilian; D A Kudrna; A Kleinhofs; M Yano; N Kurata; B Steffenson; T Sasaki
Journal:  Nucleic Acids Res       Date:  1995-07-25       Impact factor: 16.971

10.  MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations.

Authors:  E S Lander; P Green; J Abrahamson; A Barlow; M J Daly; S E Lincoln; L A Newberg; L Newburg
Journal:  Genomics       Date:  1987-10       Impact factor: 5.736
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  21 in total

1.  Analysis of genome-wide linkage disequilibrium in the highly polyploid sugarcane.

Authors:  Louis-Marie Raboin; Jérôme Pauquet; Mike Butterfield; Angélique D'Hont; Jean-Christophe Glaszmann
Journal:  Theor Appl Genet       Date:  2008-01-15       Impact factor: 5.699

2.  Haplotype structure around Bru1 reveals a narrow genetic basis for brown rust resistance in modern sugarcane cultivars.

Authors:  L Costet; L Le Cunff; S Royaert; L-M Raboin; C Hervouet; L Toubi; H Telismart; O Garsmeur; Y Rousselle; J Pauquet; S Nibouche; J-C Glaszmann; J-Y Hoarau; A D'Hont
Journal:  Theor Appl Genet       Date:  2012-05-10       Impact factor: 5.699

3.  Diploid/polyploid syntenic shuttle mapping and haplotype-specific chromosome walking toward a rust resistance gene (Bru1) in highly polyploid sugarcane (2n approximately 12x approximately 115).

Authors:  Loïc Le Cunff; Olivier Garsmeur; Louis Marie Raboin; Jérome Pauquet; Hugues Telismart; Athiappan Selvi; Laurent Grivet; Romain Philippe; Dilara Begum; Monique Deu; Laurent Costet; Rod Wing; Jean Christophe Glaszmann; Angélique D'Hont
Journal:  Genetics       Date:  2008-08-30       Impact factor: 4.562

4.  Genetic analysis of the sugarcane (Saccharum spp.) cultivar 'LCP 85-384'. I. Linkage mapping using AFLP, SSR, and TRAP markers.

Authors:  Suman Andru; Yong-Bao Pan; Songkran Thongthawee; David M Burner; Collins A Kimbeng
Journal:  Theor Appl Genet       Date:  2011-04-07       Impact factor: 5.699

5.  An autopolyploid-suitable polyBSA-seq strategy for screening candidate genetic markers linked to leaf blight resistance in sugarcane.

Authors:  Zhoutao Wang; Hui Ren; Chao Pang; Guilong Lu; Fu Xu; Wei Cheng; Youxiong Que; Liping Xu
Journal:  Theor Appl Genet       Date:  2021-11-13       Impact factor: 5.699

6.  Genomics in cereals: from genome-wide conserved orthologous set (COS) sequences to candidate genes for trait dissection.

Authors:  Umar Masood Quraishi; Michael Abrouk; Stéphanie Bolot; Caroline Pont; Mickael Throude; Nicolas Guilhot; Carole Confolent; Fernanda Bortolini; Sébastien Praud; Alain Murigneux; Gilles Charmet; Jerome Salse
Journal:  Funct Integr Genomics       Date:  2009-07-03       Impact factor: 3.410

7.  Genetic mapping in sugarcane, a high polyploid, using bi-parental progeny: identification of a gene controlling stalk colour and a new rust resistance gene.

Authors:  L-M Raboin; K M Oliveira; L Lecunff; H Telismart; D Roques; M Butterfield; J-Y Hoarau; A D'Hont
Journal:  Theor Appl Genet       Date:  2006-03-22       Impact factor: 5.699

8.  Molecular insights into the origin of the brown rust resistance gene Bru1 among Saccharum species.

Authors:  Heng-Bo Wang; Ping-Hua Chen; Yan-Qing Yang; Angelique D'Hont; Yun-Hai Lu
Journal:  Theor Appl Genet       Date:  2017-08-18       Impact factor: 5.699

9.  Molecular Linkage Mapping and Marker-Trait Associations with NlRPT, a Downy Mildew Resistance Gene in Nicotiana langsdorffii.

Authors:  Shouan Zhang; Muqiang Gao; David Zaitlin
Journal:  Front Plant Sci       Date:  2012-08-24       Impact factor: 5.753

10.  Gene mapping via bulked segregant RNA-Seq (BSR-Seq).

Authors:  Sanzhen Liu; Cheng-Ting Yeh; Ho Man Tang; Dan Nettleton; Patrick S Schnable
Journal:  PLoS One       Date:  2012-05-07       Impact factor: 3.240
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