Literature DB >> 14576293

Therapeutic modulation of endogenous gene function by agents with designed DNA-sequence specificities.

Taco G Uil1, Hidde J Haisma, Marianne G Rots.   

Abstract

Designer molecules that can specifically target pre-determined DNA sequences provide a means to modulate endogenous gene function. Different classes of sequence-specific DNA-binding agents have been developed, including triplex-forming molecules, synthetic polyamides and designer zinc finger proteins. These different types of designer molecules with their different principles of engineered sequence specificity are reviewed in this paper. Furthermore, we explore and discuss the potential of these molecules as therapeutic modulators of endogenous gene function, focusing on modulation by stable gene modification and by regulation of gene transcription.

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Year:  2003        PMID: 14576293      PMCID: PMC275457          DOI: 10.1093/nar/gkg815

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  181 in total

1.  Cellular uptake of N-methylpyrrole/N-methylimidazole polyamide-dye conjugates.

Authors:  Jason M Belitsky; Stephanie J Leslie; Paramjit S Arora; Terry A Beerman; Peter B Dervan
Journal:  Bioorg Med Chem       Date:  2002-10       Impact factor: 3.641

2.  Targeted regulation of imprinted genes by synthetic zinc-finger transcription factors.

Authors:  Y Jouvenot; V Ginjala; L Zhang; P-Q Liu; M Oshimura; A P Feinberg; A P Wolffe; Rolf Ohlsson; P D Gregory
Journal:  Gene Ther       Date:  2003-03       Impact factor: 5.250

3.  Site-specific mutagenesis by triple helix-forming oligonucleotides containing a reactive nucleoside analog.

Authors:  Fumi Nagatsugi; Shigeki Sasaki; Paul S Miller; Michael M Seidman
Journal:  Nucleic Acids Res       Date:  2003-03-15       Impact factor: 16.971

4.  Inhibition of human papilloma virus E2 DNA binding protein by covalently linked polyamides.

Authors:  Thomas D Schaal; William G Mallet; Dustin L McMinn; Nam V Nguyen; Michelle M Sopko; Sam John; Bhavin S Parekh
Journal:  Nucleic Acids Res       Date:  2003-02-15       Impact factor: 16.971

5.  DNA crosslinking and biological activity of a hairpin polyamide-chlorambucil conjugate.

Authors:  Yong-Dong Wang; Jaroslaw Dziegielewski; Nicholas R Wurtz; Barbara Dziegielewska; Peter B Dervan; Terry A Beerman
Journal:  Nucleic Acids Res       Date:  2003-02-15       Impact factor: 16.971

6.  Human zinc fingers as building blocks in the construction of artificial transcription factors.

Authors:  Kwang-Hee Bae; Young Do Kwon; Hyun-Chul Shin; Moon-Sun Hwang; Eun-Hyun Ryu; Kyung-Soon Park; Hyo-Young Yang; Dong-Ki Lee; Yangsoon Lee; Jinwoo Park; Heung Sun Kwon; Hyun-Won Kim; Byung-Il Yeh; Hyean-Woo Lee; Soon Hyung Sohn; Joonho Yoon; Wongi Seol; Jin-Soo Kim
Journal:  Nat Biotechnol       Date:  2003-02-18       Impact factor: 54.908

7.  Scanning the human genome with combinatorial transcription factor libraries.

Authors:  Pilar Blancafort; Laurent Magnenat; Carlos F Barbas
Journal:  Nat Biotechnol       Date:  2003-02-18       Impact factor: 54.908

8.  Design of triple helix forming C-glycoside molecules.

Authors:  Jian-Sen Li; Yun-Hua Fan; Yi Zhang; Luis A Marky; Barry Gold
Journal:  J Am Chem Soc       Date:  2003-02-26       Impact factor: 15.419

9.  Cell cycle modulation of gene targeting by a triple helix-forming oligonucleotide.

Authors:  Alokes Majumdar; Nitin Puri; Bernard Cuenoud; Francois Natt; Pierre Martin; Alexander Khorlin; Natalia Dyatkina; Albert J George; Paul S Miller; Michael M Seidman
Journal:  J Biol Chem       Date:  2003-01-21       Impact factor: 5.157

10.  Blocking transcription through a nucleosome with synthetic DNA ligands.

Authors:  Joel M Gottesfeld; Jason M Belitsky; Christian Melander; Peter B Dervan; Karolin Luger
Journal:  J Mol Biol       Date:  2002-08-09       Impact factor: 5.469

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  24 in total

1.  In vitro selection of restriction endonucleases by in vitro compartmentalization.

Authors:  Nobuhide Doi; Shin Kumadaki; Yuko Oishi; Nobutaka Matsumura; Hiroshi Yanagawa
Journal:  Nucleic Acids Res       Date:  2004-07-06       Impact factor: 16.971

2.  DNA complexes: Durable binders.

Authors:  Adam R Urbach
Journal:  Nat Chem       Date:  2011-10-24       Impact factor: 24.427

3.  Double-helix disruption.

Authors: 
Journal:  Nat Chem       Date:  2012-07-24       Impact factor: 24.427

Review 4.  The past and presence of gene targeting: from chemicals and DNA via proteins to RNA.

Authors:  T M Geel; M H J Ruiters; R H Cool; L Halby; D C Voshart; L Andrade Ruiz; K E Niezen-Koning; P B Arimondo; M G Rots
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2018-06-05       Impact factor: 6.237

5.  Sliding on DNA: From Peptides to Small Molecules.

Authors:  Kan Xiong; Graham S Erwin; Aseem Z Ansari; Paul C Blainey
Journal:  Angew Chem Int Ed Engl       Date:  2016-11-04       Impact factor: 15.336

6.  Functional validation of putative tumor suppressor gene C13ORF18 in cervical cancer by Artificial Transcription Factors.

Authors:  Christian Huisman; G Bea A Wisman; Hinke G Kazemier; Marcel A T M van Vugt; Ate G J van der Zee; Ed Schuuring; Marianne G Rots
Journal:  Mol Oncol       Date:  2013-03-05       Impact factor: 6.603

7.  Triplex DNA-mediated downregulation of Ets2 expression results in growth inhibition and apoptosis in human prostate cancer cells.

Authors:  Giuseppina M Carbone; Sara Napoli; Alessandra Valentini; Franco Cavalli; Dennis K Watson; Carlo V Catapano
Journal:  Nucleic Acids Res       Date:  2004-08-16       Impact factor: 16.971

8.  Statistical analysis of structural determinants for protein-DNA-binding specificity.

Authors:  Rosario I Corona; Jun-Tao Guo
Journal:  Proteins       Date:  2016-06-15

9.  Netropsin improves survival from endotoxaemia by disrupting HMGA1 binding to the NOS2 promoter.

Authors:  Marianne A Grant; Rebecca M Baron; Alvaro A Macias; Matthew D Layne; Mark A Perrella; Alan C Rigby
Journal:  Biochem J       Date:  2009-02-15       Impact factor: 3.857

10.  A novel FRET pair for detection of parallel DNA triplexes by the LightCycler.

Authors:  Uffe V Schneider; Jette K Severinsen; Imrich Géci; Limei M Okkels; Nina Jøhnk; Nikolaj D Mikkelsen; Teena Klinge; Erik B Pedersen; Henrik Westh; Gorm Lisby
Journal:  BMC Biotechnol       Date:  2010-01-27       Impact factor: 2.563

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