Literature DB >> 14573524

Genome size variations in diploid African Coffea species.

M Noirot1, V Poncet, P Barre, P Hamon, S Hamon, A De Kochko.   

Abstract

Flow cytometry was conducted to evaluate genome size diversity among African diploid species of the Coffea genus. The study included 15 species and six new taxa from Congolese and Cameroonian forest regions which have yet to be botanically characterized. Between-population differences were also recorded in some cases. These evaluations using an internal standard were highly correlated with previous results obtained with an external standard, but differences of up to 18 % existed for some species, involving stoichiometric errors. Consequently, genome size variation between species and within species are discussed as true genome size differences or stoichiometric errors. Environmental and phenotypic correlations with genome size are also discussed.

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Year:  2003        PMID: 14573524      PMCID: PMC4244848          DOI: 10.1093/aob/mcg183

Source DB:  PubMed          Journal:  Ann Bot        ISSN: 0305-7364            Impact factor:   4.357


  6 in total

1.  Genome size in 21 Artemisia L. species (Asteraceae, Anthemideae): systematic, evolutionary, and ecological implications.

Authors:  M Torrell; J Vallès
Journal:  Genome       Date:  2001-04       Impact factor: 2.166

2.  Effects of caffeine and chlorogenic acid on propidium iodide accessibility to DNA: consequences on genome size evaluation in coffee tree.

Authors:  M Noirot; P Barre; C Duperray; J Louarn; S Hamon
Journal:  Ann Bot       Date:  2003-08       Impact factor: 4.357

3.  Rapid flow cytometric analysis of the cell cycle in intact plant tissues.

Authors:  D W Galbraith; K R Harkins; J M Maddox; N M Ayres; D P Sharma; E Firoozabady
Journal:  Science       Date:  1983-06-03       Impact factor: 47.728

Review 4.  A cytometric exercise in plant DNA histograms, with 2C values for 70 species.

Authors:  D Marie; S C Brown
Journal:  Biol Cell       Date:  1993       Impact factor: 4.458

5.  Reliable flow cytometric estimation of nuclear DNA content in coffee trees.

Authors:  P Barre; M Noirot; J Louarn; C Duperray; S Hamon
Journal:  Cytometry       Date:  1996-05-01

6.  Consequences of stoichiometric error on nuclear DNA content evaluation in Coffea liberica var. dewevrei using DAPI and propidium iodide.

Authors:  Michel Noirot; Philippe Barre; Jacques Louarn; Christophe Duperray; Serge Hamon
Journal:  Ann Bot       Date:  2002-04       Impact factor: 4.357

  6 in total
  14 in total

1.  Physical mapping of rDNA and heterochromatin in chromosomes of 16 Coffea species: a revised view of species differentiation.

Authors:  P Hamon; S Siljak-Yakovlev; S Srisuwan; O Robin; V Poncet; S Hamon; A de Kochko
Journal:  Chromosome Res       Date:  2009-03-31       Impact factor: 5.239

2.  Two novel Ty1-copia retrotransposons isolated from coffee trees can effectively reveal evolutionary relationships in the Coffea genus (Rubiaceae).

Authors:  Perla Hamon; Pierre-Olivier Duroy; Christine Dubreuil-Tranchant; Paulo Mafra D'Almeida Costa; Caroline Duret; Norosoa J Razafinarivo; Emmanuel Couturon; Serge Hamon; Alexandre de Kochko; Valérie Poncet; Romain Guyot
Journal:  Mol Genet Genomics       Date:  2011-04-20       Impact factor: 3.291

3.  Genetic structure and diversity of coffee (Coffea) across Africa and the Indian Ocean islands revealed using microsatellites.

Authors:  Norosoa J Razafinarivo; Romain Guyot; Aaron P Davis; Emmanuel Couturon; Serge Hamon; Dominique Crouzillat; Michel Rigoreau; Christine Dubreuil-Tranchant; Valerie Poncet; Alexandre De Kochko; Jean-Jacques Rakotomalala; Perla Hamon
Journal:  Ann Bot       Date:  2012-12-28       Impact factor: 4.357

4.  Partial sequencing reveals the transposable element composition of Coffea genomes and provides evidence for distinct evolutionary stories.

Authors:  Romain Guyot; Thibaud Darré; Mathilde Dupeyron; Alexandre de Kochko; Serge Hamon; Emmanuel Couturon; Dominique Crouzillat; Michel Rigoreau; Jean-Jacques Rakotomalala; Nathalie E Raharimalala; Sélastique Doffou Akaffou; Perla Hamon
Journal:  Mol Genet Genomics       Date:  2016-07-28       Impact factor: 3.291

5.  Ancestral synteny shared between distantly-related plant species from the asterid (Coffea canephora and Solanum Sp.) and rosid (Vitis vinifera) clades.

Authors:  Romain Guyot; Florent Lefebvre-Pautigny; Christine Tranchant-Dubreuil; Michel Rigoreau; Perla Hamon; Thierry Leroy; Serge Hamon; Valérie Poncet; Dominique Crouzillat; Alexandre de Kochko
Journal:  BMC Genomics       Date:  2012-03-20       Impact factor: 3.969

Review 6.  Coffea cytogenetics: from the first karyotypes to the meeting with genomics.

Authors:  Mariana Cansian Sattler; Stéfanie Cristina de Oliveira; Maria Andréia Corrêa Mendonça; Wellington Ronildo Clarindo
Journal:  Planta       Date:  2022-05-02       Impact factor: 4.116

7.  BAC-end sequences analysis provides first insights into coffee (Coffea canephora P.) genome composition and evolution.

Authors:  Alexis Dereeper; Romain Guyot; Christine Tranchant-Dubreuil; François Anthony; Xavier Argout; Fabien de Bellis; Marie-Christine Combes; Frederick Gavory; Alexandre de Kochko; Dave Kudrna; Thierry Leroy; Julie Poulain; Myriam Rondeau; Xiang Song; Rod Wing; Philippe Lashermes
Journal:  Plant Mol Biol       Date:  2013-05-25       Impact factor: 4.076

8.  AFLP and SSR polymorphism in a Coffea interspecific backcross progeny [( C. heterocalyx x C. canephora) x C. canephora].

Authors:  I Coulibaly; B Revol; M Noirot; V Poncet; M Lorieux; C Carasco-Lacombe; J Minier; M Dufour; P Hamon
Journal:  Theor Appl Genet       Date:  2003-07-23       Impact factor: 5.699

9.  Comparison of the Coffea canephora and C. arabica karyotype based on chromosomal DNA content.

Authors:  Wellington Ronildo Clarindo; Carlos Roberto Carvalho
Journal:  Plant Cell Rep       Date:  2008-10-08       Impact factor: 4.570

10.  Microcollinearity in an ethylene receptor coding gene region of the Coffea canephora genome is extensively conserved with Vitis vinifera and other distant dicotyledonous sequenced genomes.

Authors:  Romain Guyot; Marion de la Mare; Véronique Viader; Perla Hamon; Olivier Coriton; José Bustamante-Porras; Valérie Poncet; Claudine Campa; Serge Hamon; Alexandre de Kochko
Journal:  BMC Plant Biol       Date:  2009-02-25       Impact factor: 4.215

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