Literature DB >> 12879256

AFLP and SSR polymorphism in a Coffea interspecific backcross progeny [( C. heterocalyx x C. canephora) x C. canephora].

I Coulibaly1, B Revol, M Noirot, V Poncet, M Lorieux, C Carasco-Lacombe, J Minier, M Dufour, P Hamon.   

Abstract

An interspecific cross (BC 1) involving a species with one of the largest genomes in the Coffea genus [ Coffea heterocalyx (HET), qDNA = 1.74 pg] and a species with a medium-sized genome [ Coffea canephora (CAN), qDNA = 1.43 pg] was studied using two types of molecular markers, AFLP and SSR. One hundred and eighty eight AFLP bands and 34 SSR primer pairs were suitable for mapping. The total map length was 1,360 cM with 190 loci distributed in 15 linkage groups. The results were compared to those obtained previously on an interspecific BC 1 progeny involving a species with a medium-sized genome ( Coffea liberica var dewevrei, DEW) and a species with one of the smallest genomes ( Coffea pseudozanguebariae, PSE). They are discussed relative to three main points: (1) the relevance of the different marker types, (2) the genomic distribution of AFLP and SSR markers, and (3) the relation between AFLP polymorphism and genome size.

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Year:  2003        PMID: 12879256     DOI: 10.1007/s00122-003-1355-4

Source DB:  PubMed          Journal:  Theor Appl Genet        ISSN: 0040-5752            Impact factor:   5.699


  12 in total

1.  Genome size variations in diploid African Coffea species.

Authors:  M Noirot; V Poncet; P Barre; P Hamon; S Hamon; A De Kochko
Journal:  Ann Bot       Date:  2003-11       Impact factor: 4.357

2.  AFLP: a new technique for DNA fingerprinting.

Authors:  P Vos; R Hogers; M Bleeker; M Reijans; T van de Lee; M Hornes; A Frijters; J Pot; J Peleman; M Kuiper
Journal:  Nucleic Acids Res       Date:  1995-11-11       Impact factor: 16.971

3.  Phylogenetic analysis of chloroplast DNA variation in Coffea L.

Authors:  J Cros; M C Combes; P Trouslot; F Anthony; S Hamon; A Charrier; P Lashermes
Journal:  Mol Phylogenet Evol       Date:  1998-02       Impact factor: 4.286

4.  Genetic linkage map of Coffea canephora: effect of segregation distortion and analysis of recombination rate in male and female meioses.

Authors:  P Lashermes; M C Combes; N S Prakash; P Trouslot; M Lorieux; A Charrier
Journal:  Genome       Date:  2001-08       Impact factor: 2.166

5.  Development of microsatellite markers in peach [ Prunus persica (L.) Batsch] and their use in genetic diversity analysis in peach and sweet cherry ( Prunus avium L.).

Authors:  E. Dirlewanger; P. Cosson; M. Tavaud; J. Aranzana; C. Poizat; A. Zanetto; P. Arús; F. Laigret
Journal:  Theor Appl Genet       Date:  2002-05-23       Impact factor: 5.699

6.  Studies of the transferability of microsatellites derived from Triticum tauschii to hexaploid wheat and to diploid related species using amplification, hybridization and sequence comparisons.

Authors:  H. Guyomarc'h; P. Sourdille; J. Edwards; M. Bernard
Journal:  Theor Appl Genet       Date:  2002-06-19       Impact factor: 5.699

7.  Hypomethylated sequences: characterization of the duplicate soybean genome.

Authors:  T Zhu; J M Schupp; A Oliphant; P Keim
Journal:  Mol Gen Genet       Date:  1994-09-28

8.  A microsatellite map of wheat.

Authors:  M S Röder; V Korzun; K Wendehake; J Plaschke; M H Tixier; P Leroy; M W Ganal
Journal:  Genetics       Date:  1998-08       Impact factor: 4.562

9.  Combined mapping of AFLP and RFLP markers in barley.

Authors:  J Becker; P Vos; M Kuiper; F Salamini; M Heun
Journal:  Mol Gen Genet       Date:  1995-11-01

10.  MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations.

Authors:  E S Lander; P Green; J Abrahamson; A Barlow; M J Daly; S E Lincoln; L A Newberg; L Newburg
Journal:  Genomics       Date:  1987-10       Impact factor: 5.736

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  9 in total

1.  Physical mapping of rDNA and heterochromatin in chromosomes of 16 Coffea species: a revised view of species differentiation.

Authors:  P Hamon; S Siljak-Yakovlev; S Srisuwan; O Robin; V Poncet; S Hamon; A de Kochko
Journal:  Chromosome Res       Date:  2009-03-31       Impact factor: 5.239

2.  Two novel Ty1-copia retrotransposons isolated from coffee trees can effectively reveal evolutionary relationships in the Coffea genus (Rubiaceae).

Authors:  Perla Hamon; Pierre-Olivier Duroy; Christine Dubreuil-Tranchant; Paulo Mafra D'Almeida Costa; Caroline Duret; Norosoa J Razafinarivo; Emmanuel Couturon; Serge Hamon; Alexandre de Kochko; Valérie Poncet; Romain Guyot
Journal:  Mol Genet Genomics       Date:  2011-04-20       Impact factor: 3.291

3.  Genetic structure and diversity of coffee (Coffea) across Africa and the Indian Ocean islands revealed using microsatellites.

Authors:  Norosoa J Razafinarivo; Romain Guyot; Aaron P Davis; Emmanuel Couturon; Serge Hamon; Dominique Crouzillat; Michel Rigoreau; Christine Dubreuil-Tranchant; Valerie Poncet; Alexandre De Kochko; Jean-Jacques Rakotomalala; Perla Hamon
Journal:  Ann Bot       Date:  2012-12-28       Impact factor: 4.357

4.  SSR mining in coffee tree EST databases: potential use of EST-SSRs as markers for the Coffea genus.

Authors:  Valérie Poncet; Myriam Rondeau; Christine Tranchant; Anne Cayrel; Serge Hamon; Alexandre de Kochko; Perla Hamon
Journal:  Mol Genet Genomics       Date:  2006-08-19       Impact factor: 3.291

5.  Current genetic differentiation of Coffea canephora Pierre ex A. Froehn in the Guineo-Congolian African zone: cumulative impact of ancient climatic changes and recent human activities.

Authors:  Céline Gomez; Stéphane Dussert; Perla Hamon; Serge Hamon; Alexandre de Kochko; Valérie Poncet
Journal:  BMC Evol Biol       Date:  2009-07-16       Impact factor: 3.260

6.  Development of microsatellite markers for identifying Brazilian Coffea arabica varieties.

Authors:  Elisa S N Vieira; Edila V de R Von Pinho; Maria G G Carvalho; Danny G Esselink; Ben Vosman
Journal:  Genet Mol Biol       Date:  2010-09-01       Impact factor: 1.771

7.  Microcollinearity in an ethylene receptor coding gene region of the Coffea canephora genome is extensively conserved with Vitis vinifera and other distant dicotyledonous sequenced genomes.

Authors:  Romain Guyot; Marion de la Mare; Véronique Viader; Perla Hamon; Olivier Coriton; José Bustamante-Porras; Valérie Poncet; Claudine Campa; Serge Hamon; Alexandre de Kochko
Journal:  BMC Plant Biol       Date:  2009-02-25       Impact factor: 4.215

8.  MoccaDB - an integrative database for functional, comparative and diversity studies in the Rubiaceae family.

Authors:  Olga Plechakova; Christine Tranchant-Dubreuil; Fabrice Benedet; Marie Couderc; Alexandra Tinaut; Véronique Viader; Petra De Block; Perla Hamon; Claudine Campa; Alexandre de Kochko; Serge Hamon; Valérie Poncet
Journal:  BMC Plant Biol       Date:  2009-09-29       Impact factor: 4.215

9.  Development of new genomic microsatellite markers from robusta coffee (Coffea canephora Pierre ex A. Froehner) showing broad cross-species transferability and utility in genetic studies.

Authors:  Prasad Suresh Hendre; Regur Phanindranath; V Annapurna; Albert Lalremruata; Ramesh K Aggarwal
Journal:  BMC Plant Biol       Date:  2008-04-30       Impact factor: 4.215

  9 in total

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