Literature DB >> 14532094

Single-cell enumeration of an uncultivated TM7 subgroup in the human subgingival crevice.

Cleber C Ouverney1, Gary C Armitage, David A Relman.   

Abstract

Specific oligonucleotide hybridization conditions were established for single-cell enumeration of uncultivated TM7 and IO25 bacteria by using clones expressing heterologous 16S rRNA. In situ analysis of human subgingival crevice specimens revealed that a greater proportion of samples from sites of chronic periodontitis than from healthy sites contained TM7 subgroup IO25. In addition, IO25 bacterial cells from periodontitis site samples were more abundant and fourfold longer than IO25 cells from healthy site samples.

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Year:  2003        PMID： 14532094      PMCID： PMC201210          DOI： 10.1128/AEM.69.10.6294-6298.2003

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  15 in total

1.  Design and evaluation of 16S rRNA-targeted oligonucleotide probes for fluorescence in situ hybridization.

Authors:  P Hugenholtz; G W Tyson; L L Blackall
Journal:  Methods Mol Biol       Date:  2002

2.  Fluorescence in situ hybridization of 16S rRNA gene clones (Clone-FISH) for probe validation and screening of clone libraries.

Authors:  Andreas Schramm; Bernhard M Fuchs; Jeppe L Nielsen; Mauro Tonolla; David A Stahl
Journal:  Environ Microbiol       Date:  2002-11       Impact factor: 5.491

Review 3.  Phylogenetic identification and in situ detection of individual microbial cells without cultivation.

Authors:  R I Amann; W Ludwig; K H Schleifer
Journal:  Microbiol Rev       Date:  1995-03

4.  Prevalence of bacteria of division TM7 in human subgingival plaque and their association with disease.

Authors:  Mary M Brinig; Paul W Lepp; Cleber C Ouverney; Gary C Armitage; David A Relman
Journal:  Appl Environ Microbiol       Date:  2003-03       Impact factor: 4.792

5.  Synthetic oligonucleotide probes deduced from amino acid sequence data. Theoretical and practical considerations.

Authors:  R Lathe
Journal:  J Mol Biol       Date:  1985-05-05       Impact factor: 5.469

6.  Investigation of candidate division TM7, a recently recognized major lineage of the domain Bacteria with no known pure-culture representatives.

Authors:  P Hugenholtz; G W Tyson; R I Webb; A M Wagner; L L Blackall
Journal:  Appl Environ Microbiol       Date:  2001-01       Impact factor: 4.792

7.  Mechanism of DNA segregation in prokaryotes: ParM partitioning protein of plasmid R1 co-localizes with its replicon during the cell cycle.

Authors:  R B Jensen; K Gerdes
Journal:  EMBO J       Date:  1999-07-15       Impact factor: 11.598

8.  Identification of some of the major groups of bacteria in efficient and nonefficient biological phosphorus removal activated sludge systems.

Authors:  P L Bond; R Erhart; M Wagner; J Keller; L L Blackall
Journal:  Appl Environ Microbiol       Date:  1999-09       Impact factor: 4.792

9.  Total counts of marine bacteria include a large fraction of non-nucleoid-containing bacteria (ghosts).

Authors:  U L Zweifel; A Hagstrom
Journal:  Appl Environ Microbiol       Date:  1995-06       Impact factor: 4.792

10.  Increase in Fluorescence Intensity of 16S rRNA In Situ Hybridization in Natural Samples Treated with Chloramphenicol.

Authors:  C C Ouverney; J A Fuhrman
Journal:  Appl Environ Microbiol       Date:  1997-07       Impact factor: 4.792
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  28 in total

1.  Flow cytometry-assisted cloning of specific sequence motifs from complex 16S rRNA gene libraries.

Authors:  Jeppe L Nielsen; Andreas Schramm; Anne E Bernhard; Gerrit J van den Engh; David A Stahl
Journal:  Appl Environ Microbiol       Date:  2004-12       Impact factor: 4.792

2.  Dissecting biological "dark matter" with single-cell genetic analysis of rare and uncultivated TM7 microbes from the human mouth.

Authors:  Yann Marcy; Cleber Ouverney; Elisabeth M Bik; Tina Lösekann; Natalia Ivanova; Hector Garcia Martin; Ernest Szeto; Darren Platt; Philip Hugenholtz; David A Relman; Stephen R Quake
Journal:  Proc Natl Acad Sci U S A       Date:  2007-07-09       Impact factor: 11.205

3.  Identification of a novel toluene-degrading bacterium from the candidate phylum TM7, as determined by DNA stable isotope probing.

Authors:  Chunling Luo; Shuguang Xie; Weimin Sun; Xiangdong Li; Alison M Cupples
Journal:  Appl Environ Microbiol       Date:  2009-05-15       Impact factor: 4.792

4.  Tissue-associated "Candidatus Mycoplasma corallicola" and filamentous bacteria on the cold-water coral Lophelia pertusa (Scleractinia).

Authors:  Sven C Neulinger; Andrea Gärtner; Johanna Järnegren; Martin Ludvigsen; Karin Lochte; Wolf-Christian Dullo
Journal:  Appl Environ Microbiol       Date:  2008-12-29       Impact factor: 4.792

Review 5.  Lessons learned and unlearned in periodontal microbiology.

Authors:  Ricardo Teles; Flavia Teles; Jorge Frias-Lopez; Bruce Paster; Anne Haffajee
Journal:  Periodontol 2000       Date:  2013-06       Impact factor: 7.589

Review 6.  Newly identified pathogens associated with periodontitis: a systematic review.

Authors:  P J Pérez-Chaparro; C Gonçalves; L C Figueiredo; M Faveri; E Lobão; N Tamashiro; P Duarte; M Feres
Journal:  J Dent Res       Date:  2014-07-29       Impact factor: 6.116

7.  Community-wide transcriptome of the oral microbiome in subjects with and without periodontitis.

Authors:  Ana E Duran-Pinedo; Tsute Chen; Ricardo Teles; Jacqueline R Starr; Xiaoshan Wang; Keerthana Krishnan; Jorge Frias-Lopez
Journal:  ISME J       Date:  2014-03-06       Impact factor: 10.302

8.  Metabolic network percolation quantifies biosynthetic capabilities across the human oral microbiome.

Authors:  David B Bernstein; Floyd E Dewhirst; Daniel Segrè
Journal:  Elife       Date:  2019-06-13       Impact factor: 8.140

9.  Insights Obtained by Culturing Saccharibacteria With Their Bacterial Hosts.

Authors:  B Bor; A J Collins; P P Murugkar; S Balasubramanian; T T To; E L Hendrickson; J K Bedree; F B Bidlack; C D Johnston; W Shi; J S McLean; X He; F E Dewhirst
Journal:  J Dent Res       Date:  2020-02-19       Impact factor: 6.116

10.  Assessment of the diversity, abundance, and ecological distribution of members of candidate division SR1 reveals a high level of phylogenetic diversity but limited morphotypic diversity.

Authors:  James P Davis; Noha H Youssef; Mostafa S Elshahed
Journal:  Appl Environ Microbiol       Date:  2009-04-24       Impact factor: 4.792
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