Literature DB >> 1449237

Algorithms for a location database.

N E Morton1, A Collins, S Lawrence, D C Shields.   

Abstract

The algorithms that drive the ldb location database are described. The program captures data on genetic and physical maps and combines information from different sources into a summary map. To assure portability it was developed in Fortran on a SUN SPARCStation under Unix. The algorithms, which combine rule-based seriation with a minimum deviance bootstrap, allow investigators and chromosome committees to produce a composite location in Mb that integrates partial maps. The program and manual are now available from the authors.

Mesh:

Year:  1992        PMID: 1449237     DOI: 10.1111/j.1469-1809.1992.tb01147.x

Source DB:  PubMed          Journal:  Ann Hum Genet        ISSN: 0003-4800            Impact factor:   1.670


  13 in total

1.  A sequence-based integrated map of chromosome 22.

Authors:  W J Tapper; N E Morton; I Dunham; X Ke; A Collins
Journal:  Genome Res       Date:  2001-07       Impact factor: 9.043

2.  Systematic evaluation of map quality: human chromosome 22.

Authors:  Tara C Matise; Christopher J Porter; Steven Buyske; A Jamie Cuttichia; Erik P Sulman; Peter S White
Journal:  Am J Hum Genet       Date:  2002-04-19       Impact factor: 11.025

3.  Identification of an obesity quantitative trait locus on mouse chromosome 2 and evidence of linkage to body fat and insulin on the human homologous region 20q.

Authors:  A V Lembertas; L Pérusse; Y C Chagnon; J S Fisler; C H Warden; D A Purcell-Huynh; F T Dionne; J Gagnon; A Nadeau; A J Lusis; C Bouchard
Journal:  J Clin Invest       Date:  1997-09-01       Impact factor: 14.808

4.  A comparative location database (CompLDB): map integration within and between species.

Authors:  Webber Liao; Andrew Collins; Matthew Hobbs; Mehar S Khatkar; Junhong Luo; Frank W Nicholas
Journal:  Mamm Genome       Date:  2007-06-23       Impact factor: 2.957

5.  Evidence for linkage of a candidate chromosome 1 region to human systemic lupus erythematosus.

Authors:  B P Tsao; R M Cantor; K C Kalunian; C J Chen; H Badsha; R Singh; D J Wallace; R C Kitridou; S L Chen; N Shen; Y W Song; D A Isenberg; C L Yu; B H Hahn; J I Rotter
Journal:  J Clin Invest       Date:  1997-02-15       Impact factor: 14.808

6.  A first-generation metric linkage disequilibrium map of bovine chromosome 6.

Authors:  Mehar S Khatkar; Andrew Collins; Julie A L Cavanagh; Rachel J Hawken; Matthew Hobbs; Kyall R Zenger; Wes Barris; Alexander E McClintock; Peter C Thomson; Frank W Nicholas; Herman W Raadsma
Journal:  Genetics       Date:  2006-07-02       Impact factor: 4.562

7.  Studies on locus content mapping.

Authors:  J W Teague; A Collins; N E Morton
Journal:  Proc Natl Acad Sci U S A       Date:  1996-10-15       Impact factor: 11.205

8.  Lysinuric protein intolerance (LPI) gene maps to the long arm of chromosome 14.

Authors:  T Lauteala; P Sistonen; M L Savontaus; J Mykkänen; J Simell; M Lukkarinen; O Simell; P Aula
Journal:  Am J Hum Genet       Date:  1997-06       Impact factor: 11.025

9.  A metric map of humans: 23,500 loci in 850 bands.

Authors:  A Collins; J Frezal; J Teague; N E Morton
Journal:  Proc Natl Acad Sci U S A       Date:  1996-12-10       Impact factor: 11.205

10.  Integration of gene maps: chromosome 21.

Authors:  S Lawrence; A Collins; B J Keats; M Hulten; N E Morton
Journal:  Proc Natl Acad Sci U S A       Date:  1993-08-01       Impact factor: 11.205

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