Literature DB >> 1380697

A ribosomal ambiguity mutation in the 530 loop of E. coli 16S rRNA.

M O'Connor1, H U Göringer, A E Dahlberg.   

Abstract

A series of base substitution and deletion mutations were constructed in the highly conserved 530 stem and loop region of E. coli 16S rRNA involved in binding of tRNA to the ribosomal A site. Base substitution and deletion of G517 produced significant effects on cell growth rate and translational fidelity, permitting readthrough of UGA, UAG and UAA stop codons as well as stimulating +1 and -1 frameshifting in vivo. By contrast, mutations at position 534 had little or no effect on growth rate or translational fidelity. The results demonstrate the importance of G517 in maintaining translational fidelity but do not support a base pairing interaction between G517 and U534.

Entities:  

Mesh:

Substances:

Year:  1992        PMID: 1380697      PMCID: PMC334129          DOI: 10.1093/nar/20.16.4221

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  44 in total

Review 1.  RNA-protein interactions in 30S ribosomal subunits: folding and function of 16S rRNA.

Authors:  S Stern; T Powers; L M Changchien; H F Noller
Journal:  Science       Date:  1989-05-19       Impact factor: 47.728

2.  Transfer RNA shields specific nucleotides in 16S ribosomal RNA from attack by chemical probes.

Authors:  D Moazed; H F Noller
Journal:  Cell       Date:  1986-12-26       Impact factor: 41.582

3.  A further study of misreading of codons induced by streptomycin and neomycin using ribopolynucleotides containing two nucleotides in alternating sequence as templates.

Authors:  J Davies; D S Jones; H G Khorana
Journal:  J Mol Biol       Date:  1966-06       Impact factor: 5.469

4.  Ram ribosomes are defective proofreaders.

Authors:  D I Andersson; C G Kurland
Journal:  Mol Gen Genet       Date:  1983

5.  Versatile low-copy-number plasmid vectors for cloning in Escherichia coli.

Authors:  N G Stoker; N F Fairweather; B G Spratt
Journal:  Gene       Date:  1982-06       Impact factor: 3.688

6.  Gene organization and primary structure of a ribosomal RNA operon from Escherichia coli.

Authors:  J Brosius; T J Dull; D D Sleeter; H F Noller
Journal:  J Mol Biol       Date:  1981-05-15       Impact factor: 5.469

7.  Substitution of an invariant nucleotide at the base of the highly conserved '530-loop' of 15S rRNA causes suppression of yeast mitochondrial ochre mutations.

Authors:  Z H Shen; T D Fox
Journal:  Nucleic Acids Res       Date:  1989-06-26       Impact factor: 16.971

8.  Low activity of -galactosidase in frameshift mutants of Escherichia coli.

Authors:  J F Atkins; D Elseviers; L Gorini
Journal:  Proc Natl Acad Sci U S A       Date:  1972-05       Impact factor: 11.205

9.  Oligonucleotide-directed mutagenesis using M13-derived vectors: an efficient and general procedure for the production of point mutations in any fragment of DNA.

Authors:  M J Zoller; M Smith
Journal:  Nucleic Acids Res       Date:  1982-10-25       Impact factor: 16.971

Review 10.  Ribosome gymnastics--degree of difficulty 9.5, style 10.0.

Authors:  J F Atkins; R B Weiss; R F Gesteland
Journal:  Cell       Date:  1990-08-10       Impact factor: 41.582

View more
  47 in total

1.  Translational suppressors and antisuppressors alter the efficiency of the Ty1 programmed translational frameshift.

Authors:  C L Burck; Y O Chernoff; R Liu; P J Farabaugh; S W Liebman
Journal:  RNA       Date:  1999-11       Impact factor: 4.942

2.  Enhancement of translation by the downstream box does not involve base pairing of mRNA with the penultimate stem sequence of 16S rRNA.

Authors:  M O'Connor; T Asai; C L Squires; A E Dahlberg
Journal:  Proc Natl Acad Sci U S A       Date:  1999-08-03       Impact factor: 11.205

3.  Escherichia coli cells bearing a ribosomal ambiguity mutation in rpsD have a mutator phenotype that correlates with increased mistranslation.

Authors:  Sergey Balashov; M Zafri Humayun
Journal:  J Bacteriol       Date:  2003-08       Impact factor: 3.490

4.  Translational defects in a mutant deficient in YajL, the bacterial homolog of the parkinsonism-associated protein DJ-1.

Authors:  Fatoum Kthiri; Valérie Gautier; Hai-Tuong Le; Marie-Françoise Prère; Olivier Fayet; Abderrahim Malki; Ahmed Landoulsi; Gilbert Richarme
Journal:  J Bacteriol       Date:  2010-10-01       Impact factor: 3.490

5.  Effects of a number of classes of 50S inhibitors on stop codon readthrough during protein synthesis.

Authors:  Jill Thompson; Catherine A Pratt; Albert E Dahlberg
Journal:  Antimicrob Agents Chemother       Date:  2004-12       Impact factor: 5.191

6.  Multiple defects in translation associated with altered ribosomal protein L4.

Authors:  Michael O'Connor; Steven T Gregory; Albert E Dahlberg
Journal:  Nucleic Acids Res       Date:  2004-10-27       Impact factor: 16.971

Review 7.  A gripping tale of ribosomal frameshifting: extragenic suppressors of frameshift mutations spotlight P-site realignment.

Authors:  John F Atkins; Glenn R Björk
Journal:  Microbiol Mol Biol Rev       Date:  2009-03       Impact factor: 11.056

8.  The single pseudouridine residue in Escherichia coli 16S RNA is located at position 516.

Authors:  A Bakin; J A Kowalak; J A McCloskey; J Ofengand
Journal:  Nucleic Acids Res       Date:  1994-09-11       Impact factor: 16.971

9.  R chi-01, a new family of oxazolidinones that overcome ribosome-based linezolid resistance.

Authors:  Eugene Skripkin; Timothy S McConnell; Joseph DeVito; Laura Lawrence; Joseph A Ippolito; Erin M Duffy; Joyce Sutcliffe; François Franceschi
Journal:  Antimicrob Agents Chemother       Date:  2008-07-28       Impact factor: 5.191

10.  Allosteric control of the ribosome by small-molecule antibiotics.

Authors:  Leyi Wang; Arto Pulk; Michael R Wasserman; Michael B Feldman; Roger B Altman; Jamie H Doudna Cate; Scott C Blanchard
Journal:  Nat Struct Mol Biol       Date:  2012-08-19       Impact factor: 15.369

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.