Literature DB >> 1370342

An intergenic G-rich region in Leishmania tarentolae kinetoplast maxicircle DNA is a pan-edited cryptogene encoding ribosomal protein S12.

D A Maslov1, N R Sturm, B M Niner, E S Gruszynski, M Peris, L Simpson.   

Abstract

Six short G-rich intergenic regions in the maxicircle of Leishmania tarentolae are conserved in location and polarity in two other kinetoplastid species. We show here that G-rich region 6 (G6) represents a pan-edited cryptogene which contains at least two domains edited independently in a 3'-to-5' manner connected by short unedited regions. In the completely edited RNA, 117 uridines are added at 49 sites and 32 uridines are deleted at 13 sites, creating a translated 85-amino-acid polypeptide. Similar polypeptides are probably encoded by pan-edited G6 transcripts in two other species. The G6 polypeptide has significant sequence similarity to the family of S12 ribosomal proteins. A minicircle-encoded gRNA overlaps 12 editing sites in G6 mRNA, and chimeric gRNA/mRNA molecules were shown to exist, in agreement with the transesterification model for editing.

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Year:  1992        PMID: 1370342      PMCID: PMC364069          DOI: 10.1128/mcb.12.1.56-67.1992

Source DB:  PubMed          Journal:  Mol Cell Biol        ISSN: 0270-7306            Impact factor:   4.272


  49 in total

1.  The cyanelle str operon from Cyanophora paradoxa: sequence analysis and phylogenetic implications.

Authors:  M Kraus; M Götz; W Löffelhardt
Journal:  Plant Mol Biol       Date:  1990-10       Impact factor: 4.076

2.  A model for RNA editing in kinetoplastid mitochondria: "guide" RNA molecules transcribed from maxicircle DNA provide the edited information.

Authors:  B Blum; N Bakalara; L Simpson
Journal:  Cell       Date:  1990-01-26       Impact factor: 41.582

3.  RNA editing involves indiscriminate U changes throughout precisely defined editing domains.

Authors:  C J Decker; B Sollner-Webb
Journal:  Cell       Date:  1990-06-15       Impact factor: 41.582

4.  Trypanosoma equiperdum minicircles encode three distinct primary transcripts which exhibit guide RNA characteristics.

Authors:  V W Pollard; S L Hajduk
Journal:  Mol Cell Biol       Date:  1991-03       Impact factor: 4.272

5.  The MURF3 gene of T. brucei contains multiple domains of extensive editing and is homologous to a subunit of NADH dehydrogenase.

Authors:  D J Koslowsky; G J Bhat; A L Perrollaz; J E Feagin; K Stuart
Journal:  Cell       Date:  1990-09-07       Impact factor: 41.582

6.  Partially edited mRNAs for cytochrome b and subunit III of cytochrome oxidase from Leishmania tarentolae mitochondria: RNA editing intermediates.

Authors:  N R Sturm; L Simpson
Journal:  Cell       Date:  1990-06-01       Impact factor: 41.582

7.  Isolation of maxicircle component of kinetoplast DNA from hemoflagellate protozoa.

Authors:  L Simpson
Journal:  Proc Natl Acad Sci U S A       Date:  1979-04       Impact factor: 11.205

8.  The mitochondrial tRNAs of Trypanosoma brucei are nuclear encoded.

Authors:  K Hancock; S L Hajduk
Journal:  J Biol Chem       Date:  1990-11-05       Impact factor: 5.157

9.  Editing of kinetoplastid mitochondrial mRNAs by uridine addition and deletion generates conserved amino acid sequences and AUG initiation codons.

Authors:  J M Shaw; J E Feagin; K Stuart; L Simpson
Journal:  Cell       Date:  1988-05-06       Impact factor: 41.582

10.  Short leader sequences may be transferred from small RNAs to pre-mature mRNAs by trans-splicing in Euglena.

Authors:  L H Tessier; M Keller; R L Chan; R Fournier; J H Weil; P Imbault
Journal:  EMBO J       Date:  1991-09       Impact factor: 11.598

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  25 in total

1.  Structure of Leishmania minicircle kinetoplast DNA classes.

Authors:  V Y Yurchenko; E M Merzlyak; A A Kolesnikov; L P Martinkina; Y Y Vengerov
Journal:  J Clin Microbiol       Date:  1999-05       Impact factor: 5.948

Review 2.  RNA editing in trypanosomes. The us(e) of guide RNAs.

Authors:  R Benne
Journal:  Mol Biol Rep       Date:  1992-09       Impact factor: 2.316

Review 3.  When you can't trust the DNA: RNA editing changes transcript sequences.

Authors:  Volker Knoop
Journal:  Cell Mol Life Sci       Date:  2010-10-12       Impact factor: 9.261

4.  Kinetoplast DNA-encoded ribosomal protein S12: a possible functional link between mitochondrial RNA editing and translation in Trypanosoma brucei.

Authors:  Inna Aphasizheva; Dmitri A Maslov; Ruslan Aphasizhev
Journal:  RNA Biol       Date:  2013-10-14       Impact factor: 4.652

Review 5.  High throughput sequencing revolution reveals conserved fundamentals of U-indel editing.

Authors:  Sara L Zimmer; Rachel M Simpson; Laurie K Read
Journal:  Wiley Interdiscip Rev RNA       Date:  2018-06-11       Impact factor: 9.957

6.  3' adenylation determines mRNA abundance and monitors completion of RNA editing in T. brucei mitochondria.

Authors:  Ronald D Etheridge; Inna Aphasizheva; Paul D Gershon; Ruslan Aphasizhev
Journal:  EMBO J       Date:  2008-05-08       Impact factor: 11.598

7.  Editing of Trypanosoma brucei maxicircle CR5 mRNA generates variable carboxy terminal predicted protein sequences.

Authors:  L K Read; K D Wilson; P J Myler; K Stuart
Journal:  Nucleic Acids Res       Date:  1994-04-25       Impact factor: 16.971

8.  U-insertion/deletion Edited Sequence Database.

Authors:  L Simpson; S H Wang; O H Thiemann; J D Alfonzo; D A Maslov; H A Avila
Journal:  Nucleic Acids Res       Date:  1998-01-01       Impact factor: 16.971

Review 9.  RNA editing in kinetoplastid protozoa.

Authors:  K Stuart; T E Allen; S Heidmann; S D Seiwert
Journal:  Microbiol Mol Biol Rev       Date:  1997-03       Impact factor: 11.056

10.  Transcription initiation defines kinetoplast RNA boundaries.

Authors:  François M Sement; Takuma Suematsu; Liye Zhang; Tian Yu; Lan Huang; Inna Aphasizheva; Ruslan Aphasizhev
Journal:  Proc Natl Acad Sci U S A       Date:  2018-10-17       Impact factor: 11.205

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