Literature DB >> 1324724

Synthesis and properties of a conformationally restricted spin-labeled analog of ATP and its interaction with myosin and skeletal muscle.

D R Alessi1, J E Corrie, P G Fajer, M A Ferenczi, D D Thomas, I P Trayer, D R Trentham.   

Abstract

The synthesis is described of a spin-labeled analog of ATP, 2',3'-O-(1-oxy-2,2,6,6-tetramethyl-4-piperidylidene)adenosine 5'-triphosphate (SL-ATP). The spin-label moiety is attached by two bonds to the ribose ring as a spiroketal and hence has restricted conformational mobility relative to the ribose moiety of ATP. The synthesis proceeds via an acid-catalyzed addition of adenosine 5'-monophosphate to 1-acetoxy-4-methoxy-2,2,6,6-tetramethyl-1,2,5,6-tetrahydropyridine in acetonitrile. The spiroketal product is pyrophosphorylated, and alkaline hydrolysis with concomitant aerial oxidation gives the required product. The spin-labeled moiety probably takes up two rapidly interconverting conformations with respect to the ribose ring on the basis of the 1H NMR spectra of its precursors and related uridine derivatives [Alessi et al. (1991) J. Chem. Soc., Perkin Trans.1,2243-2247]. SL-ATP is a substrate for myosin and actomyosin with similar kinetic parameters to ATP during triphosphatase activity. SL-ATP supports muscle contraction and permits relaxation of permeabilized rabbit skeletal muscle fibers. SL-ADP is a substrate for yeast 3-phosphoglycerate kinase, thus permitting regeneration of SL-ATP from SL-ADP within muscle fibers. Electron paramagnetic resonance (EPR) studies of SL-ADP bound to myosin filaments and to myofibrils show a degree of nanosecond motion independent of that of the protein, which may be due to conformational flexibility of the ribose moiety of ATP bound to myosin's active site. This nanosecond motion is more restricted in myofibrils than in myosin filaments, suggesting that the binding of actin affects the ribose binding site in myosin. EPR studies on SL-ADP bound to rigor cross-bridges in muscle fiber bundles showed the nucleotide to be highly oriented with respect to the fiber axis.

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Year:  1992        PMID: 1324724     DOI: 10.1021/bi00149a039

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  10 in total

1.  Comparative single-molecule and ensemble myosin enzymology: sulfoindocyanine ATP and ADP derivatives.

Authors:  K Oiwa; J F Eccleston; M Anson; M Kikumoto; C T Davis; G P Reid; M A Ferenczi; J E Corrie; A Yamada; H Nakayama; D R Trentham
Journal:  Biophys J       Date:  2000-06       Impact factor: 4.033

2.  Multiple conformations of the nucleotide site of Kinesin family motors in the triphosphate state.

Authors:  Nariman Naber; Adam Larson; Sarah Rice; Roger Cooke; Edward Pate
Journal:  J Mol Biol       Date:  2011-01-26       Impact factor: 5.469

3.  Nucleotide pocket thermodynamics measured by EPR reveal how energy partitioning relates myosin speed to efficiency.

Authors:  Thomas J Purcell; Nariman Naber; Kathy Franks-Skiba; Alexander R Dunn; Catherine C Eldred; Christopher L Berger; András Málnási-Csizmadia; James A Spudich; Douglas M Swank; Edward Pate; Roger Cooke
Journal:  J Mol Biol       Date:  2010-12-23       Impact factor: 5.469

4.  Dynamics of the nucleotide pocket of myosin measured by spin-labeled nucleotides.

Authors:  Nariman Naber; Thomas J Purcell; Edward Pate; Roger Cooke
Journal:  Biophys J       Date:  2006-10-06       Impact factor: 4.033

5.  Fingerprint patterns from laser-induced azido photochemistry of spin-labeled photoaffinity ATP analogs in matrix-assisted laser desorption/ionization mass spectrometry.

Authors:  X Chen; W F Siems; G R Asbury; R G Yount
Journal:  J Am Soc Mass Spectrom       Date:  1999-12       Impact factor: 3.109

6.  EPR spectra and molecular dynamics agree that the nucleotide pocket of myosin V is closed and that it opens on binding actin.

Authors:  Thomas J Purcell; Nariman Naber; Shirley Sutton; Roger Cooke; Edward Pate
Journal:  J Mol Biol       Date:  2011-05-27       Impact factor: 5.469

7.  Model-independent decomposition of two-state data.

Authors:  Eric C Landahl; Sarah E Rice
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2013-12-16

8.  The conserved L5 loop establishes the pre-powerstroke conformation of the Kinesin-5 motor, eg5.

Authors:  Adam G Larson; Nariman Naber; Roger Cooke; Edward Pate; Sarah E Rice
Journal:  Biophys J       Date:  2010-06-02       Impact factor: 4.033

9.  Conformational changes at the nucleotide site in the presence of bound ADP do not set the velocity of fast Drosophila myosins.

Authors:  Catherine C Eldred; Nariman Naber; Edward Pate; Roger Cooke; Douglas M Swank
Journal:  J Muscle Res Cell Motil       Date:  2012-12-01       Impact factor: 2.698

10.  A novel adenosine triphosphate analog with a heavy atom to target the nucleotide binding site of proteins.

Authors:  N Naber; M Matuska; E P Sablin; E Pate; R Cooke
Journal:  Protein Sci       Date:  1995-09       Impact factor: 6.725

  10 in total

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