Literature DB >> 13129344

Triple-helix propensity of hydroxyproline and fluoroproline: comparison of host-guest and repeating tripeptide collagen models.

Anton V Persikov1, John A M Ramshaw, Alan Kirkpatrick, Barbara Brodsky.   

Abstract

Peptide models have proved important in defining the structural features of the collagen triple-helix. Some models are based on multiple repeats of a given tripeptide unit, while a host-guest design includes an individual tripeptide unit substituted within a constant repeating Pro-Hyp-Gly framework. In the present study, proline, hydroxyproline, and fluoroproline residues are incorporated in X- or Y-positions of a guest triplet in the host-guest peptide design. All host-guest peptides, including Hyp-Pro-Gly, formed stable triple-helices, even though a triple-helix cannot be formed by (Hyp-Pro-Gly)10. The order of stability Pro-Hyp-Gly > Pro-Pro-Gly > Hyp-Pro-Gly remains the same in all models, while the Pro-Flp-Gly is very stabilizing in a repeating context but destabilizing in a host-guest context. The range of thermal stabilities and calorimetric enthalpies is very small among the five host-guest peptides, consistent with the concept that the effect of one Xaa-Yaa-Gly tripeptide unit in the host-guest system would be less than the much larger variations when there are 10 repeating units. However, a simple additive model based on host-guest peptides predicts a greater stability than experimentally observed. The difference in stability contributions of the same tripeptide unit in host-guest versus repeating tripeptide systems illustrates the impact of sequence environment on stability, and factors that play a role include ring puckering as a consequence of electron inductive effects, residual monomer structure, and native state hydration networks.

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Year:  2003        PMID: 13129344     DOI: 10.1021/ja036673+

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  19 in total

1.  Equilibrium thermal transitions of collagen model peptides.

Authors:  Anton V Persikov; Yujia Xu; Barbara Brodsky
Journal:  Protein Sci       Date:  2004-03-09       Impact factor: 6.725

2.  Stabilization of the collagen triple helix by O-methylation of hydroxyproline residues.

Authors:  Frank W Kotch; Ilia A Guzei; Ronald T Raines
Journal:  J Am Chem Soc       Date:  2008-02-14       Impact factor: 15.419

3.  Stabilization of collagen-model, triple-helical peptides for in vitro and in vivo applications.

Authors:  Manishabrata Bhowmick; Gregg B Fields
Journal:  Methods Mol Biol       Date:  2013

4.  Aspergillus collagen-like genes (acl): identification, sequence polymorphism, and assessment for PCR-based pathogen detection.

Authors:  Kiril Tuntevski; Brandon C Durney; Anna K Snyder; P Rocco Lasala; Ajay P Nayak; Brett J Green; Donald H Beezhold; Rita V M Rio; Lisa A Holland; Slawomir Lukomski
Journal:  Appl Environ Microbiol       Date:  2013-10-11       Impact factor: 4.792

5.  Preparation and characterization of monomers to tetramers of a collagen-like domain from Streptococcus pyogenes.

Authors:  Yong Y Peng; Violet Stoichevska; Linda Howell; Soren Madsen; Jerome A Werkmeister; Geoff J Dumsday; John A M Ramshaw
Journal:  Bioengineered       Date:  2014-11-11       Impact factor: 3.269

6.  4-Fluoroprolines: Conformational Analysis and Effects on the Stability and Folding of Peptides and Proteins.

Authors:  Robert W Newberry; Ronald T Raines
Journal:  Top Heterocycl Chem       Date:  2016-01-12

Review 7.  Synthesis and biological applications of collagen-model triple-helical peptides.

Authors:  Gregg B Fields
Journal:  Org Biomol Chem       Date:  2010-01-20       Impact factor: 3.876

8.  Sequence recombination improves target specificity in a redesigned collagen peptide abc-type heterotrimer.

Authors:  Sumana Giddu; Fei Xu; Vikas Nanda
Journal:  Proteins       Date:  2012-11-05

9.  Contribution of dipole-dipole interactions to the stability of the collagen triple helix.

Authors:  Roberto Improta; Rita Berisio; Luigi Vitagliano
Journal:  Protein Sci       Date:  2008-03-27       Impact factor: 6.725

10.  Proline editing: a general and practical approach to the synthesis of functionally and structurally diverse peptides. Analysis of steric versus stereoelectronic effects of 4-substituted prolines on conformation within peptides.

Authors:  Anil K Pandey; Devan Naduthambi; Krista M Thomas; Neal J Zondlo
Journal:  J Am Chem Soc       Date:  2013-03-11       Impact factor: 15.419

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