Literature DB >> 33070231

Engineering of a thermo-alkali-stable lipase from Rhizopus chinensis by rational design of a buried disulfide bond and combinatorial mutagenesis.

Rui Wang1,2, Shang Wang1, Yan Xu1, Xiaowei Yu3.   

Abstract

To improve the thermostability of the lipase (r27RCL) from Rhizopus chinensis through rational design, a newly introduced buried disulfide bond F223C/G247C was proved to be beneficial to thermostability. Interestingly, F223C/G247C was also found to improve the alkali tolerance of the lipase. Subsequently, six other thermostabilizing mutations from our previous work were integrated into the mutant F223C/G247C, leading to a thermo-alkali-stable mutant m32. Compared to the wild-type lipase, the associative effect of the beneficial mutations showed significant improvements on the thermostability of m32, with a 74.7-fold increase in half-life at 60 °C, a 21.2 °C higher [Formula: see text] value and a 10 °C elevation in optimum temperature. The mutated m32 was also found stable at pH 9.0-10.0. Furthermore, the molecular dynamics simulations of m32 indicated that its rigidity was enhanced due to the decreased solvent-accessible surface area, a newly formed salt bridge, and the increased ΔΔG values.

Entities:  

Keywords:  Disulfide bond design; Molecular dynamics simulations; Rhizopus chinensis; Thermo-alkali-stable lipase

Mesh:

Substances:

Year:  2020        PMID: 33070231     DOI: 10.1007/s10295-020-02324-1

Source DB:  PubMed          Journal:  J Ind Microbiol Biotechnol        ISSN: 1367-5435            Impact factor:   3.346


  26 in total

1.  SS-Stabilizing Proteins Rationally: Intrinsic Disorder-Based Design of Stabilizing Disulphide Bridges in GFP.

Authors:  Bogdan S Melnik; Tatiana V Povarnitsyna; Anatoly S Glukhov; Tatyana N Melnik; Vladimir N Uversky; Ramaswamy H Sarma
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2.  Trends in Food Enzymology.

Authors:  Holger Zorn; Qing X Li
Journal:  J Agric Food Chem       Date:  2016-12-15       Impact factor: 5.279

Review 3.  Lipases from the genus Rhizopus: Characteristics, expression, protein engineering and application.

Authors:  Xiao-Wei Yu; Yan Xu; Rong Xiao
Journal:  Prog Lipid Res       Date:  2016-08-04       Impact factor: 16.195

4.  MODIP revisited: re-evaluation and refinement of an automated procedure for modeling of disulfide bonds in proteins.

Authors:  Vardhan S Dani; C Ramakrishnan; Raghavan Varadarajan
Journal:  Protein Eng       Date:  2003-03

5.  Isolation and characterization of a thermophilic lipase from bacillus thermoleovorans ID-1.

Authors:  D Lee; Y Koh; K Kim; B Kim; H Choi; D Kim; M T Suhartono; Y Pyun
Journal:  FEMS Microbiol Lett       Date:  1999-10-15       Impact factor: 2.742

6.  The contribution of cross-links to protein stability: a normal mode analysis of the configurational entropy of the native state.

Authors:  B Tidor; M Karplus
Journal:  Proteins       Date:  1993-01

7.  Enhancing the thermostability of Rhizopus chinensis lipase by rational design and MD simulations.

Authors:  Rui Wang; Shang Wang; Yan Xu; Xiaowei Yu
Journal:  Int J Biol Macromol       Date:  2020-05-30       Impact factor: 6.953

8.  Conformational stability and activity of ribonuclease T1 with zero, one, and two intact disulfide bonds.

Authors:  C N Pace; G R Grimsley; J A Thomson; B J Barnett
Journal:  J Biol Chem       Date:  1988-08-25       Impact factor: 5.157

9.  Enhanced thermostability of a Rhizopus chinensis lipase by in vivo recombination in Pichia pastoris.

Authors:  Xiao-Wei Yu; Rui Wang; Meng Zhang; Yan Xu; Rong Xiao
Journal:  Microb Cell Fact       Date:  2012-08-06       Impact factor: 5.328

10.  Disulfide by Design 2.0: a web-based tool for disulfide engineering in proteins.

Authors:  Douglas B Craig; Alan A Dombkowski
Journal:  BMC Bioinformatics       Date:  2013-12-01       Impact factor: 3.169

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  1 in total

1.  Disulfide Bond Engineering for Enhancing the Thermostability of the Maltotetraose-Forming Amylase from Pseudomonas saccharophila STB07.

Authors:  Yinglan Wang; Caiming Li; Xiaofeng Ban; Zhengbiao Gu; Yan Hong; Li Cheng; Zhaofeng Li
Journal:  Foods       Date:  2022-04-21
  1 in total

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