Literature DB >> 1302007

A novel GC-rich human macrosatellite VNTR in Xq24 is differentially methylated on active and inactive X chromosomes.

J Giacalone1, J Friedes, U Francke.   

Abstract

A new X chromosome-specific repetitive sequence, a 3 kilobase HindIII clone with a base composition of 63% C+G, has been isolated. The sequence is organized as a hypervariable tandem repeat cluster ranging in size from 150-350 kilobases, with outlying single copies. This locus, designated DXZ4 and mapped to chromosome band Xq24, may consist of as many as 50 variable-length alleles. It represents a class of variable number of tandem repeat polymorphism which may be termed 'macrosatellite'. The cluster is highly methylated on the active X chromosome and hypomethylated on the inactive X.

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Year:  1992        PMID: 1302007     DOI: 10.1038/ng0592-137

Source DB:  PubMed          Journal:  Nat Genet        ISSN: 1061-4036            Impact factor:   38.330


  43 in total

1.  Structural organization of the inactive X chromosome in the mouse.

Authors:  Luca Giorgetti; Bryan R Lajoie; Ava C Carter; Mikael Attia; Ye Zhan; Jin Xu; Chong Jian Chen; Noam Kaplan; Howard Y Chang; Edith Heard; Job Dekker
Journal:  Nature       Date:  2016-07-18       Impact factor: 49.962

2.  Deletion of DXZ4 on the human inactive X chromosome alters higher-order genome architecture.

Authors:  Emily M Darrow; Miriam H Huntley; Olga Dudchenko; Elena K Stamenova; Neva C Durand; Zhuo Sun; Su-Chen Huang; Adrian L Sanborn; Ido Machol; Muhammad Shamim; Andrew P Seberg; Eric S Lander; Brian P Chadwick; Erez Lieberman Aiden
Journal:  Proc Natl Acad Sci U S A       Date:  2016-07-18       Impact factor: 11.205

3.  Variation in Xi chromatin organization and correlation of the H3K27me3 chromatin territories to transcribed sequences by microarray analysis.

Authors:  Brian P Chadwick
Journal:  Chromosoma       Date:  2006-11-14       Impact factor: 4.316

Review 4.  Macrosatellite epigenetics: the two faces of DXZ4 and D4Z4.

Authors:  Brian P Chadwick
Journal:  Chromosoma       Date:  2009-08-19       Impact factor: 4.316

5.  DXZ4 chromatin adopts an opposing conformation to that of the surrounding chromosome and acquires a novel inactive X-specific role involving CTCF and antisense transcripts.

Authors:  Brian P Chadwick
Journal:  Genome Res       Date:  2008-05-02       Impact factor: 9.043

6.  A novel molecular mechanism in human genetic disease: a DNA repeat-derived lncRNA.

Authors:  Daphne S Cabianca; Valentina Casa; Davide Gabellini
Journal:  RNA Biol       Date:  2012-10-01       Impact factor: 4.652

7.  Characterization of chromatin at structurally abnormal inactive X chromosomes reveals potential evidence of a rare hybrid active and inactive isodicentric X chromosome.

Authors:  Brian P Chadwick
Journal:  Chromosome Res       Date:  2019-11-27       Impact factor: 5.239

8.  New Advances in Human X chromosome status from a Developmental and Stem Cell Biology.

Authors:  Benjamin Patterson; Yoshiaki Tanaka; In-Hyun Park
Journal:  Tissue Eng Regen Med       Date:  2017-11-22       Impact factor: 4.169

Review 9.  The cell biology of disease: FSHD: copy number variations on the theme of muscular dystrophy.

Authors:  Daphne Selvaggia Cabianca; Davide Gabellini
Journal:  J Cell Biol       Date:  2010-12-13       Impact factor: 10.539

10.  Inactive X chromosome-specific reduction in placental DNA methylation.

Authors:  Allison M Cotton; Luana Avila; Maria S Penaherrera; Joslynn G Affleck; Wendy P Robinson; Carolyn J Brown
Journal:  Hum Mol Genet       Date:  2009-07-07       Impact factor: 6.150

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