Literature DB >> 16517680

Diverse and unique picocyanobacteria in Chesapeake Bay, revealed by 16S-23S rRNA internal transcribed spacer sequences.

Feng Chen1, Kui Wang, Jinjun Kan, Marcelino T Suzuki, K Eric Wommack.   

Abstract

rRNA internal transcribed spacer phylogeny showed that Chesapeake Bay is populated with diverse Synechococcus strains, including members of the poorly studied marine cluster B. Marine cluster B prevailed in the upper bay, while marine cluster A was common in the lower bay. Interestingly, marine cluster B Synechococcus included phycocyanin- and phycoerythrin-rich strains.

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Year:  2006        PMID： 16517680      PMCID： PMC1393199          DOI： 10.1128/AEM.72.3.2239-2243.2006

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  23 in total

1.  Phylogenetic analyses of Synechococcus strains (cyanobacteria) using sequences of 16S rDNA and part of the phycocyanin operon reveal multiple evolutionary lines and reflect phycobilin content.

Authors:  B R Robertson; N Tezuka; M M Watanabe
Journal:  Int J Syst Evol Microbiol       Date:  2001-05       Impact factor: 2.747

2.  Detection of seven major evolutionary lineages in cyanobacteria based on the 16S rRNA gene sequence analysis with new sequences of five marine Synechococcus strains.

Authors:  D Honda; A Yokota; J Sugiyama
Journal:  J Mol Evol       Date:  1999-06       Impact factor: 2.395

3.  High-resolution differentiation of Cyanobacteria by using rRNA-internal transcribed spacer denaturing gradient gel electrophoresis.

Authors:  Ingmar Janse; Marion Meima; W Edwin A Kardinaal; Gabriel Zwart
Journal:  Appl Environ Microbiol       Date:  2003-11       Impact factor: 4.792

4.  Cyanobacterial ecotypes in different optical microenvironments of a 68 degrees C hot spring mat community revealed by 16S-23S rRNA internal transcribed spacer region variation.

Authors:  Mike J Ferris; Michael Kühl; Andrea Wieland; David M Ward
Journal:  Appl Environ Microbiol       Date:  2003-05       Impact factor: 4.792

5.  Ecosystem-dependent adaptive radiations of picocyanobacteria inferred from 16S rRNA and ITS-1 sequence analysis.

Authors:  Anneliese Ernst; Sven Becker; Ute I A Wollenzien; Christine Postius
Journal:  Microbiology (Reading)       Date:  2003-01       Impact factor: 2.777

6.  Physiology and molecular phylogeny of coexisting Prochlorococcus ecotypes.

Authors:  L R Moore; G Rocap; S W Chisholm
Journal:  Nature       Date:  1998-06-04       Impact factor: 49.962

7.  Rapid diversification of marine picophytoplankton with dissimilar light-harvesting structures inferred from sequences of Prochlorococcus and Synechococcus (Cyanobacteria).

Authors:  E Urbach; D J Scanlan; D L Distel; J B Waterbury; S W Chisholm
Journal:  J Mol Evol       Date:  1998-02       Impact factor: 2.395

8.  Genotyping of axenic and non-axenic isolates of the genus Prochlorococcus and the OMF-'Synechococcus' clade by size, sequence analysis or RFLP of the Internal Transcribed Spacer of the ribosomal operon.

Authors:  Wassila Laloui; Katarzyna A Palinska; Rosmarie Rippka; Frédéric Partensky; Nicole Tandeau de Marsac; Michael Herdman; Isabelle Iteman
Journal:  Microbiology       Date:  2002-02       Impact factor: 2.777

9.  Quantitative tracing, by Taq nuclease assays, of a synechococcus ecotype in a highly diversified natural population.

Authors:  Sven Becker; Michael Fahrbach; Peter Böger; Anneliese Ernst
Journal:  Appl Environ Microbiol       Date:  2002-09       Impact factor: 4.792

10.  Genetic diversity and distribution of periphytic Synechococcus spp. in biofilms and picoplankton of Lake Constance.

Authors:  Sven Becker; Arvind Kumar Singh; Christine Postius; Peter Böger; Anneliese Ernst
Journal:  FEMS Microbiol Ecol       Date:  2004-08-01       Impact factor: 4.194
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  37 in total

1.  Novel lineages of Prochlorococcus and Synechococcus in the global oceans.

Authors:  Sijun Huang; Steven W Wilhelm; H Rodger Harvey; Karen Taylor; Nianzhi Jiao; Feng Chen
Journal:  ISME J       Date:  2011-09-29       Impact factor: 10.302

2.  Comparison of the seasonal variations of Synechococcus assemblage structures in estuarine waters and coastal waters of Hong Kong.

Authors:  Xiaomin Xia; Nayani K Vidyarathna; Brian Palenik; Puiyin Lee; Hongbin Liu
Journal:  Appl Environ Microbiol       Date:  2015-08-28       Impact factor: 4.792

3.  Culture isolation and culture-independent clone libraries reveal new marine Synechococcus ecotypes with distinctive light and N physiologies.

Authors:  Nathan A Ahlgren; Gabrielle Rocap
Journal:  Appl Environ Microbiol       Date:  2006-08-25       Impact factor: 4.792

4.  High temporal but low spatial heterogeneity of bacterioplankton in the Chesapeake Bay.

Authors:  Jinjun Kan; Marcelino T Suzuki; Kui Wang; Sarah E Evans; Feng Chen
Journal:  Appl Environ Microbiol       Date:  2007-09-07       Impact factor: 4.792

5.  Detection of circular polarization in light scattered from photosynthetic microbes.

Authors:  William B Sparks; James Hough; Thomas A Germer; Feng Chen; Shiladitya DasSarma; Priya DasSarma; Frank T Robb; Nadine Manset; Ludmilla Kolokolova; Neill Reid; F Duccio Macchetto; William Martin
Journal:  Proc Natl Acad Sci U S A       Date:  2009-04-28       Impact factor: 11.205

6.  Nuclear ribosomal spacer regions in plant phylogenetics: problems and prospects.

Authors:  Péter Poczai; Jaakko Hyvönen
Journal:  Mol Biol Rep       Date:  2009-07-21       Impact factor: 2.316

7.  East Tibetan lakes harbour novel clusters of picocyanobacteria as inferred from the 16S-23S rRNA internal transcribed spacer sequences.

Authors:  Qinglong L Wu; Peng Xing; Wen-Tso Liu
Journal:  Microb Ecol       Date:  2009-11-12       Impact factor: 4.552

8.  Metagenomic characterization of Chesapeake Bay virioplankton.

Authors:  Shellie R Bench; Thomas E Hanson; Kurt E Williamson; Dhritiman Ghosh; Mark Radosovich; Kui Wang; K Eric Wommack
Journal:  Appl Environ Microbiol       Date:  2007-10-05       Impact factor: 4.792

9.  The internal transcribed spacer region, a new tool for use in species differentiation and delineation of systematic relationships within the Campylobacter genus.

Authors:  Si Ming Man; Nadeem O Kaakoush; Sophie Octavia; Hazel Mitchell
Journal:  Appl Environ Microbiol       Date:  2010-03-26       Impact factor: 4.792

10.  Photosynthetic and growth response of freshwater picocyanobacteria are strain-specific and sensitive to photoacclimation.

Authors:  Michael Moser; Cristana Callieri; Thomas Weisse
Journal:  J Plankton Res       Date:  2008-12-26       Impact factor: 2.455
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