Literature DB >> 12954983

A tale of two TUTases.

Ruslan Aphasizhev1, Inna Aphasizheva, Larry Simpson.   

Abstract

The insertion and deletion of U residues at specific sites in mRNAs in trypanosome mitochondria is thought to involve 3' terminal uridylyl transferase (TUTase) activity. TUTase activity is also required to create the nonencoded 3' oligo[U] tails of the transacting guide RNAs (gRNAs). We have described two TUTases, RET1 (RNA editing TUTase 1) and RET2 (RNA editing TUTase 2) as components of different editing complexes. Tandem affinity purification-tagged Trypanosoma brucei RET2 (TbRET2) was expressed and localized to the cytosol in Leishmania tarentolae cells by removing the mitochondrial signal sequence. Double-affinity isolation yielded tagged TbRET2, together with a few additional proteins. This material exhibits a U-specific transferase activity in which a single U is added to the 3' end of a single-stranded RNA, thereby confirming that RET2 is a 3' TUTase. We also found that RNA interference of RET2 expression in T. brucei inhibits in vitro U-insertion editing and has no effect on the length of the 3' oligo[U] tails of the gRNAs, whereas down-regulation of RET1 has a minor effect on in vitro U-insertion editing, but produces a decrease in the average length of the oligo[U] tails. This finding suggests that RET2 is responsible for U-insertions at editing sites and RET1 is involved in gRNA 3' end maturation, which is essential for creating functional gRNAs. From these results we have functionally relabeled the previously described TUT-II complex containing RET1 as the guide RNA processing complex.

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Year:  2003        PMID: 12954983      PMCID: PMC196853          DOI: 10.1073/pnas.1833120100

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  24 in total

1.  Uridylate addition and RNA ligation contribute to the specificity of kinetoplastid insertion RNA editing.

Authors:  R P Igo; S S Palazzo; M L Burgess; A K Panigrahi; K Stuart
Journal:  Mol Cell Biol       Date:  2000-11       Impact factor: 4.272

2.  Composition of the editing complex of Trypanosoma brucei.

Authors:  K Stuart; A K Panigrahi; A Schnaufer; M Drozdz; C Clayton; R Salavati
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2002-01-29       Impact factor: 6.237

Review 3.  The tandem affinity purification (TAP) method: a general procedure of protein complex purification.

Authors:  O Puig; F Caspary; G Rigaut; B Rutz; E Bouveret; E Bragado-Nilsson; M Wilm; B Séraphin
Journal:  Methods       Date:  2001-07       Impact factor: 3.608

4.  Trypanosome U-deletional RNA editing involves guide RNA-directed endonuclease cleavage, terminal U exonuclease, and RNA ligase activities.

Authors:  J Cruz-Reyes; B Sollner-Webb
Journal:  Proc Natl Acad Sci U S A       Date:  1996-08-20       Impact factor: 11.205

5.  Trypanosoma brucei TBRGG1, a mitochondrial oligo(U)-binding protein that co-localizes with an in vitro RNA editing activity.

Authors:  L Vanhamme; D Perez-Morga; C Marchal; D Speijer; L Lambert; M Geuskens; S Alexandre; N Ismaïli; U Göringer; R Benne; E Pays
Journal:  J Biol Chem       Date:  1998-08-21       Impact factor: 5.157

6.  Disruption of a gene encoding a novel mitochondrial DEAD-box protein in Trypanosoma brucei affects edited mRNAs.

Authors:  A Missel; A E Souza; G Nörskau; H U Göringer
Journal:  Mol Cell Biol       Date:  1997-09       Impact factor: 4.272

7.  A tightly regulated inducible expression system for conditional gene knock-outs and dominant-negative genetics in Trypanosoma brucei.

Authors:  E Wirtz; S Leal; C Ochatt; G A Cross
Journal:  Mol Biochem Parasitol       Date:  1999-03-15       Impact factor: 1.759

8.  Trypanosoma brucei RBP16 is a mitochondrial Y-box family protein with guide RNA binding activity.

Authors:  M L Hayman; L K Read
Journal:  J Biol Chem       Date:  1999-04-23       Impact factor: 5.157

9.  Double-stranded RNA interference in Trypanosoma brucei using head-to-head promoters.

Authors:  D J LaCount; S Bruse; K L Hill; J E Donelson
Journal:  Mol Biochem Parasitol       Date:  2000-11       Impact factor: 1.759

10.  Kinetoplastid RNA-editing-associated protein 1 (REAP-1): a novel editing complex protein with repetitive domains.

Authors:  S Madison-Antenucci; R S Sabatini; V W Pollard; S L Hajduk
Journal:  EMBO J       Date:  1998-11-02       Impact factor: 11.598

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  67 in total

1.  Comparative analysis of editosome proteins in trypanosomatids.

Authors:  Elizabeth A Worthey; Achim Schnaufer; I Saira Mian; Kenneth Stuart; Reza Salavati
Journal:  Nucleic Acids Res       Date:  2003-11-15       Impact factor: 16.971

Review 2.  Mitochondrial proteins and complexes in Leishmania and Trypanosoma involved in U-insertion/deletion RNA editing.

Authors:  Larry Simpson; Ruslan Aphasizhev; Guanghan Gao; Xuedong Kang
Journal:  RNA       Date:  2004-02       Impact factor: 4.942

3.  Two distinct roles for terminal uridylyl transferases in RNA editing.

Authors:  Jonatha M Gott
Journal:  Proc Natl Acad Sci U S A       Date:  2003-09-08       Impact factor: 11.205

4.  Trypanosoma brucei 20 S editosomes have one RNA substrate-binding site and execute RNA unwinding activity.

Authors:  Cordula Böhm; Venkata Subbaraju Katari; Michael Brecht; H Ulrich Göringer
Journal:  J Biol Chem       Date:  2012-06-01       Impact factor: 5.157

5.  In Trypanosoma brucei RNA editing, band II enables recognition specifically at each step of the U insertion cycle.

Authors:  Julie A Law; Catherine E Huang; Sean F O'Hearn; Barbara Sollner-Webb
Journal:  Mol Cell Biol       Date:  2005-04       Impact factor: 4.272

6.  Structural basis for UTP specificity of RNA editing TUTases from Trypanosoma brucei.

Authors:  Junpeng Deng; Nancy Lewis Ernst; Stewart Turley; Kenneth D Stuart; Wim G J Hol
Journal:  EMBO J       Date:  2005-11-10       Impact factor: 11.598

Review 7.  Unexplained complexity of the mitochondrial genome and transcriptome in kinetoplastid flagellates.

Authors:  Julius Lukes; Hassan Hashimi; Alena Zíková
Journal:  Curr Genet       Date:  2005-11-04       Impact factor: 3.886

8.  Identification and characterization of nuclear non-canonical poly(A) polymerases from Trypanosoma brucei.

Authors:  Ronald D Etheridge; Daniel M Clemens; Paul D Gershon; Ruslan Aphasizhev
Journal:  Mol Biochem Parasitol       Date:  2008-11-25       Impact factor: 1.759

9.  The 3'-untranslated region of cytochrome oxidase II mRNA functions in RNA editing of African trypanosomes exclusively as a cis guide RNA.

Authors:  Daniel E Golden; Stephen L Hajduk
Journal:  RNA       Date:  2004-12-01       Impact factor: 4.942

10.  Guide RNA-binding complex from mitochondria of trypanosomatids.

Authors:  James Weng; Inna Aphasizheva; Ronald D Etheridge; Lan Huang; Xiaorong Wang; Arnold M Falick; Ruslan Aphasizhev
Journal:  Mol Cell       Date:  2008-10-24       Impact factor: 17.970

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