Literature DB >> 12954787

A real-time DNase assay (ReDA) based on PicoGreen fluorescence.

Gökhan Tolun1, Richard S Myers.   

Abstract

DNA nucleases (DNases) perform a wide variety of important cellular functions and are also very useful for research and in biotechnological applications. Due to the biological and technological importance of DNases and their use in a wide range of applications, DNase activity assays are essential. Traditional DNase assays employ radiolabeled DNA substrates and require separation of the products of the reaction from the unreacted substrate before quantification of enzyme activity. As a consequence, these methods are discontinuous. In this report, we describe a continuous DNase assay based on the differential fluorescence output of a DNA dye ligand called PicoGreen. The assay was developed to characterize a processive dsDNA exonuclease, lambda exonuclease. The assay appears to have general utility as it is also suitable for measuring the DNA digestion activities of a processive helicase/nuclease, RecBCD, a distributive exonuclease, T7 gene 6 exonuclease, and an endonuclease, DNaseI. The benefits of, and limitations to, the method are discussed.

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Year:  2003        PMID: 12954787      PMCID: PMC203337          DOI: 10.1093/nar/gng111

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  30 in total

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Authors:  A K Eggleston; N A Rahim; S C Kowalczykowski
Journal:  Nucleic Acids Res       Date:  1996-04-01       Impact factor: 16.971

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  18 in total

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7.  Crystal structure of E. coli RecE protein reveals a toroidal tetramer for processing double-stranded DNA breaks.

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8.  Osmotic challenge drives rapid and reversible chromatin condensation in chondrocytes.

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9.  Selective fluorogenic chemosensors for distinct classes of nucleases.

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10.  Inhibitors of Streptococcus pneumoniae surface endonuclease EndA discovered by high-throughput screening using a PicoGreen fluorescence assay.

Authors:  Eliza J R Peterson; Dmitri Kireev; Andrea F Moon; Marika Midon; William P Janzen; Alfred Pingoud; Lars C Pedersen; Scott F Singleton
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