Literature DB >> 12946271

Improvement in hydrolytic antibody activity by change in haptenic structure from phosphate to phosphonate with retention of a common leaving-group determinant: evidence for the 'flexibility' hypothesis.

Sheraz Gul1, Sanjiv Sonkaria, Surapong Pinitglang, José Florez-Alvarez, Syeed Hussain, Emrys W Thomas, Elizabeth L Ostler, Gerard Gallacher, Marina Resmini, Keith Brocklehurst.   

Abstract

To investigate the hypothesis that decreased hapten flexibility may lead to increased catalytic antibody activity, we used two closely related immunogens differing only in the flexibility of the atomic framework around the structural motif of the haptens, analogous to the reaction centre of the corresponding substrates. Identical leaving-group determinants in the haptens and identical leaving groups in the substrates removed the ambiguity inherent in some data reported in the literature. Anti-phosphate and anti-phosphonate kinetically homogeneous polyclonal catalytic antibody preparations were compared by using carbonate and ester substrates respectively, each containing a 4-nitrophenolate leaving group. Synthetic routes to a new phosphonate hapten and new ester substrate were developed. The kinetic advantage of the more rigid anti-phosphonate/ester system was demonstrated at pH 8.0 by a 13-fold advantage in k(cat)/k(non-cat) and a 100-fold advantage in the proficiency constant, k(cat)/k (non-cat) x K(m). Despite these differences, the pH-dependences of the kinetic and binding characteristics and the results of chemical modification studies suggest closely similar catalytic mechanisms. The possible origin of the kinetic advantage of the more rigid hapten/substrate system is discussed.

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Year:  2003        PMID: 12946271      PMCID: PMC1223799          DOI: 10.1042/BJ20030716

Source DB:  PubMed          Journal:  Biochem J        ISSN: 0264-6021            Impact factor:   3.857


  23 in total

1.  An investigation of antibody acyl hydrolysis catalysis using a large set of related haptens.

Authors:  A L Odenbaugh; E D Helms; B L Iverson
Journal:  Bioorg Med Chem       Date:  2000-02       Impact factor: 3.641

2.  The kinetic basis of a general method for the investigation of active site content of enzymes and catalytic antibodies: first-order behaviour under single-turnover and cycling conditions.

Authors:  C M Topham; S Gul; M Resmini; S Sonkaria; G Gallacher; K Brocklehurst
Journal:  J Theor Biol       Date:  2000-05-21       Impact factor: 2.691

3.  A general kinetic approach to investigation of active-site availability in macromolecular catalysts.

Authors:  M Resmini; S Gul; S Carter; S Sonkaria; C M Topham; G Gallacher; K Brocklehurst
Journal:  Biochem J       Date:  2000-02-15       Impact factor: 3.857

4.  A general kinetic equation for multihydronic state reactions and rapid procedures for parameter evaluation.

Authors:  S M Brocklehurst; C M Topham; K Brocklehurst
Journal:  Biochem Soc Trans       Date:  1990-08       Impact factor: 5.407

5.  Polyclonal-antibody-catalysed hydrolysis of an aryl nitrophenyl carbonate.

Authors:  G Gallacher; C S Jackson; C M Topham; M Searcey; B C Turner; G T Badman; K Brocklehurst
Journal:  Biochem Soc Trans       Date:  1990-08       Impact factor: 5.407

6.  Catalytic antibodies.

Authors:  A Tramontano; K D Janda; R A Lerner
Journal:  Science       Date:  1986-12-19       Impact factor: 47.728

7.  Selective chemical catalysis by an antibody.

Authors:  S J Pollack; J W Jacobs; P G Schultz
Journal:  Science       Date:  1986-12-19       Impact factor: 47.728

Review 8.  A sound basis for pH-dependent kinetic studies on enzymes.

Authors:  K Brocklehurst
Journal:  Protein Eng       Date:  1994-03

9.  A polyclonal antibody preparation with Michaelian catalytic properties.

Authors:  G Gallacher; C S Jackson; M Searcey; G T Badman; R Goel; C M Topham; G W Mellor; K Brocklehurst
Journal:  Biochem J       Date:  1991-11-01       Impact factor: 3.857

10.  Catalytic antibody activity elicited by active immunisation. Evidence for natural variation involving preferential stabilization of the transition state.

Authors:  G Gallacher; C S Jackson; M Searcey; R Goel; G W Mellor; C Z Smith; K Brocklehurst
Journal:  Eur J Biochem       Date:  1993-05-15
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  3 in total

1.  Evidence for 'lock and key' character in an anti-phosphonate hydrolytic antibody catalytic site augmented by non-reaction centre recognition: variation in substrate selectivity between an anti-phosphonate antibody, an anti-phosphate antibody and two hydrolytic enzymes.

Authors:  Sanjiv Sonkaria; Guillaume Boucher; José Flórez-Olvarez; Bilal Said; Syeed Hussain; Elizabeth L Ostler; Sheraz Gul; Emrys W Thomas; Marina Resmini; Gerard Gallacher; Keith Brocklehurst
Journal:  Biochem J       Date:  2004-07-01       Impact factor: 3.857

2.  Evidence that the mechanism of antibody-catalysed hydrolysis of arylcarbamates can be determined by the structure of the immunogen used to elicit the catalytic antibody.

Authors:  Guillaume Boucher; Bilal Said; Elizabeth L Ostler; Marina Resmini; Keith Brocklehurst; Gerard Gallacher
Journal:  Biochem J       Date:  2007-02-01       Impact factor: 3.857

3.  Staphylococcus aureus DNA ligase: characterization of its kinetics of catalysis and development of a high-throughput screening compatible chemiluminescent hybridization protection assay.

Authors:  Sheraz Gul; Richard Brown; Earl May; Marie Mazzulla; Martin G Smyth; Colin Berry; Andrew Morby; David J Powell
Journal:  Biochem J       Date:  2004-11-01       Impact factor: 3.857

  3 in total

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