Literature DB >> 15053743

Evidence for 'lock and key' character in an anti-phosphonate hydrolytic antibody catalytic site augmented by non-reaction centre recognition: variation in substrate selectivity between an anti-phosphonate antibody, an anti-phosphate antibody and two hydrolytic enzymes.

Sanjiv Sonkaria1, Guillaume Boucher, José Flórez-Olvarez, Bilal Said, Syeed Hussain, Elizabeth L Ostler, Sheraz Gul, Emrys W Thomas, Marina Resmini, Gerard Gallacher, Keith Brocklehurst.   

Abstract

The substrate selectivities of an anti-phosphonate and an anti-phosphate kinetically homogeneous polyclonal catalytic antibody preparation and two hydrolytic enzymes were compared by using hapten-analogous and truncated carbonate and ester substrates each containing a 4-nitrophenolate leaving group. Syntheses of the truncated substrates devoid of recognition features in the non-leaving group parts of the substrates are reported. The relatively high kinetic selectivity of the more active anti-phosphonate antibody preparation is considered to depend on a relatively rigid catalytic site with substantial reaction centre specificity together with other important recognition interactions with the extended non-leaving group part of the substrate. In contrast, the less catalytically active, more flexible anti-phosphate antibody exhibits much lower kinetic selectivity for the substrate reaction centre comparable with that of the hydrolytic enzymes with activity much less dependent on recognition interactions with the non-leaving group part of the substrate. The ways in which haptenic flexibility and IgG architecture might contribute to the differential kinetic selectivities are indicated.

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Year:  2004        PMID: 15053743      PMCID: PMC1133769          DOI: 10.1042/BJ20031966

Source DB:  PubMed          Journal:  Biochem J        ISSN: 0264-6021            Impact factor:   3.857


  25 in total

1.  The kinetic basis of a general method for the investigation of active site content of enzymes and catalytic antibodies: first-order behaviour under single-turnover and cycling conditions.

Authors:  C M Topham; S Gul; M Resmini; S Sonkaria; G Gallacher; K Brocklehurst
Journal:  J Theor Biol       Date:  2000-05-21       Impact factor: 2.691

2.  Kinetic and titration methods for determination of active site contents of enzyme and catalytic antibody preparations.

Authors:  K Brocklehurst; M Resmini; C M Topham
Journal:  Methods       Date:  2001-06       Impact factor: 3.608

Review 3.  Structural diversity of antibody catalysts.

Authors:  Béatrice Golinelli-Pimpaneau
Journal:  J Immunol Methods       Date:  2002-11-01       Impact factor: 2.303

4.  Improvement in hydrolytic antibody activity by change in haptenic structure from phosphate to phosphonate with retention of a common leaving-group determinant: evidence for the 'flexibility' hypothesis.

Authors:  Sheraz Gul; Sanjiv Sonkaria; Surapong Pinitglang; José Florez-Alvarez; Syeed Hussain; Emrys W Thomas; Elizabeth L Ostler; Gerard Gallacher; Marina Resmini; Keith Brocklehurst
Journal:  Biochem J       Date:  2003-12-15       Impact factor: 3.857

5.  Identification of signalling and non-signalling binding contributions to enzyme reactivity. Alternative combinations of binding interactions provide for change in transition-state geometry in reactions of papain.

Authors:  D Kowlessur; C M Topham; E W Thomas; M O'Driscoll; W Templeton; K Brocklehurst
Journal:  Biochem J       Date:  1989-03-15       Impact factor: 3.857

6.  The direct linear plot. A new graphical procedure for estimating enzyme kinetic parameters.

Authors:  R Eisenthal; A Cornish-Bowden
Journal:  Biochem J       Date:  1974-06       Impact factor: 3.857

7.  Pig liver esterase. Physical properties.

Authors:  D L Barker; W P Jencks
Journal:  Biochemistry       Date:  1969-10       Impact factor: 3.162

8.  Variation in the pH-dependent pre-steady-state and steady-state kinetic characteristics of cysteine-proteinase mechanism: evidence for electrostatic modulation of catalytic-site function by the neighbouring carboxylate anion.

Authors:  Syeed Hussain; Surapong Pinitglang; Tamara S F Bailey; James D Reid; Michael A Noble; Marina Resmini; Emrys W Thomas; Richard B Greaves; Chandra S Verma; Keith Brocklehurst
Journal:  Biochem J       Date:  2003-06-15       Impact factor: 3.857

9.  Kinetics of the hydrolysis of N-benzoyl-L-serine methyl ester catalysed by bromelain and by papain. Analysis of modifier mechanisms by lattice nomography, computational methods of parameter evaluation for substrate-activated catalyses and consequences of postulated non-productive binding in bromelain- and papain-catalysed hydrolyses.

Authors:  C W Wharton; A Cornish-Bowden; K Brocklehurst; E M Crook
Journal:  Biochem J       Date:  1974-08       Impact factor: 3.857

10.  Purification of rat kidney carboxylesterase and its comparison with other tissue esterases.

Authors:  T Tsujita; T Miyada; H Okuda
Journal:  J Biochem       Date:  1988-02       Impact factor: 3.387

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  3 in total

1.  A humanized antibody inhibitor for cathepsin L.

Authors:  Xiaojing Shi; Yong Zhang
Journal:  Protein Sci       Date:  2020-08-07       Impact factor: 6.725

2.  Evidence that the mechanism of antibody-catalysed hydrolysis of arylcarbamates can be determined by the structure of the immunogen used to elicit the catalytic antibody.

Authors:  Guillaume Boucher; Bilal Said; Elizabeth L Ostler; Marina Resmini; Keith Brocklehurst; Gerard Gallacher
Journal:  Biochem J       Date:  2007-02-01       Impact factor: 3.857

3.  The Combining Sites of Anti-lipid A Antibodies Reveal a Widely Utilized Motif Specific for Negatively Charged Groups.

Authors:  Omid Haji-Ghassemi; Sven Müller-Loennies; Teresa Rodriguez; Lore Brade; Hans-Dieter Grimmecke; Helmut Brade; Stephen V Evans
Journal:  J Biol Chem       Date:  2016-03-01       Impact factor: 5.157

  3 in total

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