Literature DB >> 12944118

FISHing with locked nucleic acids (LNA): evaluation of different LNA/DNA mixmers.

Asli N Silahtaroglu1, Niels Tommerup, Henrik Vissing.   

Abstract

Locked Nucleic Acids (LNA) constitute a novel class of DNA analogues that have an exceptionally high affinity towards complementary DNA and RNA. Using human classical satellite-2 repeat sequence clusters as targets, we demonstrate that LNA/DNA mixmers oligonucleotides are excellent probes for FISH combining high binding affinity with short hybridization time and even with the ability to hybridize without prior thermal denaturation of the template.

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Year:  2003        PMID: 12944118     DOI: 10.1016/s0890-8508(03)00048-3

Source DB:  PubMed          Journal:  Mol Cell Probes        ISSN: 0890-8508            Impact factor:   2.365


  25 in total

1.  Strong positional preference in the interaction of LNA oligonucleotides with DNA polymerase and proofreading exonuclease activities: implications for genotyping assays.

Authors:  Daniel A Di Giusto; Garry C King
Journal:  Nucleic Acids Res       Date:  2004-02-18       Impact factor: 16.971

2.  Locked nucleic acid and flow cytometry-fluorescence in situ hybridization for the detection of bacterial small noncoding RNAs.

Authors:  Kelly L Robertson; Gary J Vora
Journal:  Appl Environ Microbiol       Date:  2011-11-04       Impact factor: 4.792

3.  Chromosomal detection of simple sequence repeats (SSRs) using nondenaturing FISH (ND-FISH).

Authors:  Ángeles Cuadrado; Nicolás Jouve
Journal:  Chromosoma       Date:  2010-10       Impact factor: 4.316

4.  Monitoring viral RNA in infected cells with LNA flow-FISH.

Authors:  Kelly L Robertson; Anne Brooks Verhoeven; Dzung C Thach; Eddie L Chang
Journal:  RNA       Date:  2010-06-28       Impact factor: 4.942

5.  Improved in situ hybridization efficiency with locked-nucleic-acid-incorporated DNA probes.

Authors:  Kengo Kubota; Akiyoshi Ohashi; Hiroyuki Imachi; Hideki Harada
Journal:  Appl Environ Microbiol       Date:  2006-08       Impact factor: 4.792

6.  A genomewide survey argues that every zygotic gene product is dispensable for the initiation of somatic homolog pairing in Drosophila.

Authors:  Jack R Bateman; C-ting Wu
Journal:  Genetics       Date:  2008-09-14       Impact factor: 4.562

7.  Versatile design and synthesis platform for visualizing genomes with Oligopaint FISH probes.

Authors:  Brian J Beliveau; Eric F Joyce; Nicholas Apostolopoulos; Feyza Yilmaz; Chamith Y Fonseka; Ruth B McCole; Yiming Chang; Jin Billy Li; Tharanga Niroshini Senaratne; Benjamin R Williams; Jean-Marie Rouillard; Chao-ting Wu
Journal:  Proc Natl Acad Sci U S A       Date:  2012-12-11       Impact factor: 11.205

8.  Disruption of topoisomerase II perturbs pairing in drosophila cell culture.

Authors:  Benjamin R Williams; Jack R Bateman; Natasha D Novikov; C-Ting Wu
Journal:  Genetics       Date:  2007-09       Impact factor: 4.562

9.  Visualizing genomes with Oligopaint FISH probes.

Authors:  Brian J Beliveau; Nicholas Apostolopoulos; Chao-ting Wu
Journal:  Curr Protoc Mol Biol       Date:  2014-01-06

10.  DNA mimics for the rapid identification of microorganisms by fluorescence in situ hybridization (FISH).

Authors:  Laura Cerqueira; Nuno F Azevedo; Carina Almeida; Tatiana Jardim; Charles William Keevil; Maria J Vieira
Journal:  Int J Mol Sci       Date:  2008-10-20       Impact factor: 5.923

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